Gm20535 Gene Detail

Summary

• Symbol
  Gm20535
• Name
  predicted gene 20535

• Feature Type
  lncRNA gene
• IDs
  MGI:5142000
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:21302119-21305953 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 8.30 cM

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5142000	lncRNA gene	Chr12:21302119-21305953 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015227	unclassified non-coding RNA gene	Chr12:18802025-18805830 (-)
A/J	MGP_AJ_G0015201	unclassified non-coding RNA gene	Chr12:18095815-18099634 (-)
AKR/J	MGP_AKRJ_G0015164	unclassified non-coding RNA gene	Chr12:18929447-18933271 (-)
BALB/cJ	MGP_BALBcJ_G0015163	unclassified non-coding RNA gene	Chr12:18470612-18474431 (-)
C3H/HeJ	MGP_C3HHeJ_G0014987	unclassified non-coding RNA gene	Chr12:18819555-18823360 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015620	unclassified non-coding RNA gene	Chr12:19497512-19501346 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013362	unclassified non-coding RNA gene	Chr12:17694477-17698347 (-)
CAST/EiJ	MGP_CASTEiJ_G0014540	unclassified non-coding RNA gene	Chr12:16094069-16097886 (-)
CBA/J	MGP_CBAJ_G0014966	unclassified non-coding RNA gene	Chr12:20235005-20238810 (-)
DBA/2J	MGP_DBA2J_G0015059	unclassified non-coding RNA gene	Chr12:18128168-18131973 (-)
FVB/NJ	MGP_FVBNJ_G0015070	unclassified non-coding RNA gene	Chr12:18029913-18033718 (-)
LP/J	MGP_LPJ_G0015140	unclassified non-coding RNA gene	Chr12:18903394-18907199 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015097	unclassified non-coding RNA gene	Chr12:20056865-20060670 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015659	unclassified non-coding RNA gene	Chr12:18505369-18509174 (-)
PWK/PhJ	MGP_PWKPhJ_G0014332	unclassified non-coding RNA gene	Chr12:15397351-15401190 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014119	unclassified non-coding RNA gene	Chr12:15790882-15794691 (-)
WSB/EiJ	MGP_WSBEiJ_G0014643	unclassified non-coding RNA gene	Chr12:18688674-18692479 (-)

Homology

• Gene Tree
  Gm20535
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092373 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092373	Ensembl Gene Model | MGI Sequence Detail	3835	C57BL/6J
transcript	ENSMUST00000173157	Ensembl | MGI Sequence Detail	1268	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;