Gm20444 Gene Detail

Summary

• Symbol
  Gm20444
• Name
  predicted gene 20444

• Feature Type
  lncRNA gene
• IDs
  MGI:5141909
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:44018598-44020176 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 24.62 cM

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141909	lncRNA gene	Chr9:44018598-44020176 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015737	unclassified non-coding RNA gene	Chr9:42561236-42562895 (-)
A/J	MGP_AJ_G0015714	unclassified non-coding RNA gene	Chr9:41392933-41394592 (-)
AKR/J	MGP_AKRJ_G0015678	unclassified non-coding RNA gene	Chr9:42250119-42251778 (-)
BALB/cJ	MGP_BALBcJ_G0015675	unclassified non-coding RNA gene	Chr9:41132939-41134598 (-)
C3H/HeJ	MGP_C3HHeJ_G0015497	unclassified non-coding RNA gene	Chr9:42703828-42705487 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016131	unclassified non-coding RNA gene	Chr9:43839636-43841295 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013857	unclassified non-coding RNA gene	Chr9:40983634-40985281 (-)
CAST/EiJ	MGP_CASTEiJ_G0015052	unclassified non-coding RNA gene	Chr9:42545636-42547295 (-)
CBA/J	MGP_CBAJ_G0015477	unclassified non-coding RNA gene	Chr9:45417626-45419285 (-)
DBA/2J	MGP_DBA2J_G0015575	unclassified non-coding RNA gene	Chr9:41306002-41307661 (-)
FVB/NJ	MGP_FVBNJ_G0015580	unclassified non-coding RNA gene	Chr9:40555147-40556806 (-)
LP/J	MGP_LPJ_G0015655	unclassified non-coding RNA gene	Chr9:42864314-42865973 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015603	unclassified non-coding RNA gene	Chr9:47295601-47297260 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016173	unclassified non-coding RNA gene	Chr9:42144728-42146387 (-)
PWK/PhJ	MGP_PWKPhJ_G0014833	unclassified non-coding RNA gene	Chr9:41172146-41173805 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014621	unclassified non-coding RNA gene	Chr9:42445076-42446734 (-)
WSB/EiJ	MGP_WSBEiJ_G0015156	unclassified non-coding RNA gene	Chr9:42182382-42184041 (-)

Homology

• Gene Tree
  Gm20444
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092258 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092258	Ensembl Gene Model | MGI Sequence Detail	1579	C57BL/6J
transcript	ENSMUST00000174014	Ensembl | MGI Sequence Detail	648	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;