Gm20407 Gene Detail

Summary

• Symbol
  Gm20407
• Name
  predicted gene 20407

• Feature Type
  lncRNA gene
• IDs
  MGI:5141872
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:27971597-27973093 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 22.60 cM

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141872	lncRNA gene	Chr19:27971597-27973093 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015386	unclassified non-coding RNA gene	Chr19:26376393-26377889 (+)
A/J	MGP_AJ_G0015361	unclassified non-coding RNA gene	Chr19:25030694-25032190 (+)
AKR/J	MGP_AKRJ_G0015325	unclassified non-coding RNA gene	Chr19:25974850-25976346 (+)
BALB/cJ	MGP_BALBcJ_G0015325	unclassified non-coding RNA gene	Chr19:25068099-25069595 (+)
C3H/HeJ	MGP_C3HHeJ_G0015149	unclassified non-coding RNA gene	Chr19:25917820-25919316 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015779	unclassified non-coding RNA gene	Chr19:27131576-27133072 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013520	unclassified non-coding RNA gene	Chr19:25036443-25037940 (+)
CAST/EiJ	MGP_CASTEiJ_G0014700	unclassified non-coding RNA gene	Chr19:25722476-25723973 (+)
CBA/J	MGP_CBAJ_G0015128	unclassified non-coding RNA gene	Chr19:28406477-28407973 (+)
DBA/2J	MGP_DBA2J_G0015223	unclassified non-coding RNA gene	Chr19:25003797-25005293 (+)
FVB/NJ	MGP_FVBNJ_G0015230	unclassified non-coding RNA gene	Chr19:24849407-24850903 (+)
LP/J	MGP_LPJ_G0015303	unclassified non-coding RNA gene	Chr19:26374892-26376388 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015256	unclassified non-coding RNA gene	Chr19:28339184-28340680 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015818	unclassified non-coding RNA gene	Chr19:25967551-25969047 (+)
PWK/PhJ	MGP_PWKPhJ_G0014490	unclassified non-coding RNA gene	Chr19:24651267-24652763 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014277	unclassified non-coding RNA gene	Chr19:25216159-25217635 (+)
WSB/EiJ	MGP_WSBEiJ_G0014807	unclassified non-coding RNA gene	Chr19:26002948-26004444 (+)

Homology

• Gene Tree
  Gm20407
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092182 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092182	Ensembl Gene Model | MGI Sequence Detail	1497	C57BL/6J
transcript	ENSMUST00000172891	Ensembl | MGI Sequence Detail	598	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;