Gm20397 Pseudogene Detail

Summary

• Symbol
  Gm20397
• Name
  predicted gene 20397

• Feature Type
  pseudogene
• IDs
  MGI:5141862
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:116894595-116894956 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 69.08 cM

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141862	pseudogene	Chr9:116894595-116894956 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014260	pseudogene	Chr9:119680571-119680932 (+)
A/J	MGP_AJ_G0014276	pseudogene	Chr9:115255920-115256281 (+)
AKR/J	MGP_AKRJ_G0014201	pseudogene	Chr9:118222594-118222955 (+)
BALB/cJ	MGP_BALBcJ_G0014226	pseudogene	Chr9:115105680-115106041 (+)
C3H/HeJ	MGP_C3HHeJ_G0014057	pseudogene	Chr9:118711899-118712260 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014680	pseudogene	Chr9:122944872-122945233 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012488	pseudogene	Chr9:112489638-112489999 (+)
CAST/EiJ	MGP_CASTEiJ_G0013709	pseudogene	Chr9:118630801-118631162 (+)
CBA/J	MGP_CBAJ_G0014039	pseudogene	Chr9:127532378-127532739 (+)
DBA/2J	MGP_DBA2J_G0014123	pseudogene	Chr9:114723164-114723525 (+)
FVB/NJ	MGP_FVBNJ_G0014122	pseudogene	Chr9:113558484-113558845 (+)
LP/J	MGP_LPJ_G0014214	pseudogene	Chr9:120017648-120018009 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014156	pseudogene	Chr9:128673601-128673962 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014649	pseudogene	Chr9:118597046-118597407 (+)
PWK/PhJ	MGP_PWKPhJ_G0013524	pseudogene	Chr9:115071896-115072262 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013315	pseudogene	Chr9:118685291-118685652 (+)
WSB/EiJ	MGP_WSBEiJ_G0013771	pseudogene	Chr9:118496706-118497067 (+)

Homology

• Gene Tree
  Gm20397
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092516 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092516	Ensembl Gene Model | MGI Sequence Detail	362	C57BL/6J
transcript	ENSMUST00000174520	Ensembl | MGI Sequence Detail	362	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;