Gm20063 Gene Detail

Summary

• Symbol
  Gm20063
• Name
  predicted gene, 20063

• Feature Type
  lncRNA gene
• IDs
  MGI:5012248
  NCBI Gene: 100504101
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:61546446-61568606 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 26.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  723 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012248	lncRNA gene	Chr12:61535887-61568838 (-)
129S1/SvImJ	ENSMUSG00200004438	lncRNA gene	Chr12:53475481-53508197 (-)
A/J	ENSMUSG00195001819	lncRNA gene	Chr12:56146620-56179307 (-)
AKR/J	ENSMUSG00220015788	lncRNA gene	Chr12:54100290-54133025 (-)
BALB/cJ	ENSMUSG00180007746	lncRNA gene	Chr12:55163941-55196627 (-)
C3H/HeJ	ENSMUSG00175017756	lncRNA gene	Chr12:58217342-58250023 (-)
C57BL/6NJ	ENSMUSG00215009948	lncRNA gene	Chr12:54425179-54457909 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012518	lncRNA gene	Chr12:54515331-54548030 (-)
CBA/J	ENSMUSG00210014435	lncRNA gene	Chr12:54690493-54723180 (-)
DBA/2J	ENSMUSG00185001575	lncRNA gene	Chr12:56620320-56653043 (-)
FVB/NJ	ENSMUSG00205005740	lncRNA gene	Chr12:54398776-54431477 (-)
JF1/MsJ	ENSUMUG00000032134	lncRNA gene	Chr12:60613387-60646106 (-)
LP/J	ENSMUSG00230012264	lncRNA gene	Chr12:63613828-63646549 (-)
NOD/ShiLtJ	ENSMUSG00190007250	lncRNA gene	Chr12:53650603-53683328 (-)
NZO/HlLtJ	ENSMUSG00225029865	lncRNA gene	Chr12:65693681-65726367 (-)
PWK/PhJ	ENSLUMG00010002745	lncRNA gene	Chr12:54640270-54673021 (-)
SPRET/EiJ	ENSMSPG00010011409	lncRNA gene	Chr12:56241621-56273799 (-)
WSB/EiJ	ENSIUOG00005001078	lncRNA gene	Chr12:54411680-54444361 (-)

Homology

• Gene Tree
  Gm20063
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm20063
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000113429 (Evidence)
• NCBI Gene
  100504101

Representative Sequences			Length	Strain/Species
genomic	100504101	NCBI Gene Model | MGI Sequence Detail	22161	C57BL/6J
transcript	NR_045049	RefSeq | MGI Sequence Detail	1089	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm20063:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116459	Chr12:61568591-61568604 (-)	8 bp