Gm20056 Pseudogene Detail

Summary

• Symbol
  Gm20056
• Name
  predicted gene, 20056

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5012241
  NCBI Gene: 100504089
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:32227354-32227872 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 22.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012241	pseudogene	Chr16:32226841-32228959 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014517	pseudogene	ChrX:70321563-70322033 (+)
A/J	MGP_AJ_G0014527	pseudogene	ChrX:70514199-70514669 (+)
AKR/J	MGP_AKRJ_G0014454	pseudogene	ChrX:72409589-72410059 (+)
BALB/cJ	MGP_BALBcJ_G0011808	pseudogene	Chr2:117630034-117630552 (+)
C3H/HeJ	MGP_C3HHeJ_G0014313	pseudogene	ChrX:70796951-70797421 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010947	pseudogene	Chr16:30350657-30351104 (+)
CBA/J	MGP_CBAJ_G0014299	pseudogene	ChrX:74502994-74503464 (+)
DBA/2J	MGP_DBA2J_G0014380	pseudogene	ChrX:69961003-69961473 (+)
FVB/NJ	MGP_FVBNJ_G0014372	pseudogene	ChrX:69312526-69312996 (+)
LP/J	MGP_LPJ_G0014475	pseudogene	ChrX:71113184-71113654 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014410	pseudogene	ChrX:77044516-77044986 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014918	pseudogene	ChrX:70135408-70135878 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014021	pseudogene	ChrX:69412083-69412553 (+)

Homology

• Gene Tree
  Gm20056
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm20056
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000103847 (Evidence)
• NCBI Gene
  100504089

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103847	Ensembl Gene Model | MGI Sequence Detail	519	C57BL/6J
transcript	ENSMUST00000194813	Ensembl | MGI Sequence Detail	519	Not Applicable
polypeptide	XP_036016102	RefSeq | MGI Sequence Detail	185	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:294006 Rutkowski TP, et al., Behavioral changes and growth deficits in a CRISPR engineered mouse model of the schizophrenia-associated 3q29 deletion. Mol Psychiatry. 2019;
• Latest
  J:327759 Pollak RM, et al., Metabolic effects of the schizophrenia-associated 3q29 deletion. Transl Psychiatry. 2022 Feb 17;12(1):66