Gm19641 Pseudogene Detail

Summary

• Symbol
  Gm19641
• Name
  predicted gene, 19641

• Feature Type
  pseudogene
• IDs
  MGI:5011826
  NCBI Gene: 100503336
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:27375433-27375849 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 10.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011826	pseudogene	Chr1:27375433-27375849 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010043	pseudogene	Chr1:25278370-25278786 (-)
A/J	MGP_AJ_G0010025	pseudogene	Chr1:24749220-24749636 (-)
AKR/J	MGP_AKRJ_G0010007	pseudogene	Chr1:25044027-25044443 (-)
BALB/cJ	MGP_BALBcJ_G0010014	pseudogene	Chr1:24521522-24521938 (-)
C3H/HeJ	MGP_C3HHeJ_G0009944	pseudogene	Chr1:25120465-25120881 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010263	pseudogene	Chr1:26483349-26483765 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0009789	pseudogene	Chr1:25128865-25129281 (-)
CBA/J	MGP_CBAJ_G0009918	pseudogene	Chr1:27119328-27119744 (-)
DBA/2J	MGP_DBA2J_G0009940	pseudogene	Chr1:24197416-24197832 (-)
FVB/NJ	MGP_FVBNJ_G0009968	pseudogene	Chr1:23904465-23904881 (-)
LP/J	MGP_LPJ_G0010034	pseudogene	Chr1:25548130-25548546 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009925	pseudogene	Chr1:28506340-28506756 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010238	pseudogene	Chr1:24925707-24926123 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0009852	pseudogene	Chr1:24909006-24909422 (-)

Homology

• Gene Tree
  Gm19641
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19641
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000100310 (Evidence)
• NCBI Gene
  100503336

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100310	Ensembl Gene Model | MGI Sequence Detail	417	C57BL/6J
transcript	ENSMUST00000188432	Ensembl | MGI Sequence Detail	417	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;