Gm19583 Gene Detail

Summary

• Symbol
  Gm19583
• Name
  predicted gene, 19583

• Feature Type
  lncRNA gene
• IDs
  MGI:5011768
  NCBI Gene: 100503184
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:75270982-75307768 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 39.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011768	lncRNA gene	Chr5:75270982-75307768 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006671	lincRNA gene	Chr5:75228588-75267272 (+)
A/J	MGP_AJ_G0006665	lincRNA gene	Chr5:72368944-72412810 (+)
AKR/J	MGP_AKRJ_G0006635	lincRNA gene	Chr5:74726911-74765423 (+)
BALB/cJ	MGP_BALBcJ_G0006640	lincRNA gene	Chr5:73081171-73114349 (+)
C3H/HeJ	MGP_C3HHeJ_G0006586	lincRNA gene	Chr5:75114429-75153753 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006805	lincRNA gene	Chr5:78254535-78296806 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006064	lincRNA gene	Chr5:68039919-68081974 (+)
CAST/EiJ	MGP_CASTEiJ_G0006509	lincRNA gene	Chr5:74229115-74268292 (+)
CBA/J	MGP_CBAJ_G0006567	lincRNA gene	Chr5:80846229-80893886 (+)
DBA/2J	MGP_DBA2J_G0006587	lincRNA gene	Chr5:72448100-72482076 (+)
FVB/NJ	MGP_FVBNJ_G0006612	lincRNA gene	Chr5:71600536-71636242 (+)
LP/J	MGP_LPJ_G0006672	lincRNA gene	Chr5:75655047-75699493 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006596	lincRNA gene	Chr5:84057501-84099512 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006807	lincRNA gene	Chr5:74260834-74301137 (+)
PWK/PhJ	MGP_PWKPhJ_G0006448	lincRNA gene	Chr5:71441443-71476493 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006355	lincRNA gene	Chr5:73616909-73649382 (+)
WSB/EiJ	MGP_WSBEiJ_G0006560	lincRNA gene	Chr5:74554760-74590908 (+)

Homology

• Gene Tree
  Gm19583
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  344 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  3
• Genomic Mutations
  6 involving Gm19583
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107192 (Evidence)
• NCBI Gene
  100503184

Representative Sequences			Length	Strain/Species
genomic	100503184	NCBI Gene Model | MGI Sequence Detail	36787	C57BL/6J
transcript	NR_045792	RefSeq | MGI Sequence Detail	1366	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 349

  Diseases 1

  Phenotypes 344
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:341974 Harper RL, et al., Mast cell activation and degranulation in acute artery injury: A target for post-operative therapy. FASEB J. 2023 Jul;37(7):e23029

TSS for Gm19583:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46683	Chr5:75270965-75271012 (+)	7 bp