Gm19522 Gene Detail

Summary

• Symbol
  Gm19522
• Name
  predicted gene, 19522

• Feature Type
  lncRNA gene
• IDs
  MGI:5011707
  NCBI Gene: 100503040
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:42704733-42732433 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 28.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  477 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011707	lncRNA gene	Chr16:42704725-42732452 (-)
129S1/SvImJ	ENSMUSG00200029847	lncRNA gene	Chr16:39603082-39630777 (-)
A/J	ENSMUSG00195011338	lncRNA gene	Chr16:39173697-39201392 (-)
AKR/J	ENSMUSG00220031346	lncRNA gene	Chr16:39515069-39542780 (-)
BALB/cJ	ENSMUSG00180013455	lncRNA gene	Chr16:39380193-39407890 (-)
C3H/HeJ	ENSMUSG00175032972	lncRNA gene	Chr16:39643595-39671288 (-)
C57BL/6NJ	ENSMUSG00215024800	lncRNA gene	Chr16:39479033-39506726 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033559	lncRNA gene	Chr16:39947209-39974927 (-)
CBA/J	ENSMUSG00210029291	lncRNA gene	Chr16:39681396-39709091 (-)
DBA/2J	ENSMUSG00185025501	lncRNA gene	Chr16:39559997-39587692 (-)
FVB/NJ	ENSMUSG00205027571	lncRNA gene	Chr16:39511481-39539188 (-)
JF1/MsJ	ENSUMUG00000040153	lncRNA gene	Chr16:39820793-39848512 (-)
LP/J	ENSMUSG00230029844	lncRNA gene	Chr16:42156340-42184035 (-)
NOD/ShiLtJ	ENSMUSG00190024258	lncRNA gene	Chr16:39689810-39717505 (-)
NZO/HlLtJ	ENSMUSG00225028944	lncRNA gene	Chr16:45242266-45269961 (-)
PWK/PhJ	ENSLUMG00010030481	lncRNA gene	Chr16:39711022-39738768 (-)
SPRET/EiJ	ENSMSPG00010018017	lncRNA gene	Chr16:39726951-39755478 (-)
WSB/EiJ	ENSIUOG00005028141	lncRNA gene	Chr16:39785964-39813687 (-)

Homology

• Gene Tree
  Gm19522
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000116903 (Evidence)
• NCBI Gene
  100503040

Representative Sequences			Length	Strain/Species
genomic	100503040	NCBI Gene Model | MGI Sequence Detail	27701	C57BL/6J
transcript	NR_040402	RefSeq | MGI Sequence Detail	2530	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm19522:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141137	Chr16:42732441-42732452 (-)	-14 bp