Gm19409 Gene Detail

Summary

• Symbol
  Gm19409
• Name
  predicted gene, 19409

• Feature Type
  lncRNA gene
• IDs
  MGI:5011594
  NCBI Gene: 100502845
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:30972964-30975821 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 16.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011594	lncRNA gene	Chr5:30972964-30975821 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037029	sense intronic lncRNA gene	Chr5:28770198-28774287 (+)
A/J	MGP_AJ_G0037017	sense intronic lncRNA gene	Chr5:27835342-27838143 (+)
AKR/J	MGP_AKRJ_G0036965	sense intronic lncRNA gene	Chr5:28984013-28986883 (+)
BALB/cJ	MGP_BALBcJ_G0037008	sense intronic lncRNA gene	Chr5:28358335-28361192 (+)
C3H/HeJ	MGP_C3HHeJ_G0036695	sense intronic lncRNA gene	Chr5:28978549-28981406 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037521	sense intronic lncRNA gene	Chr5:30549008-30552600 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034572	sense intronic lncRNA gene	Chr5:25317359-25320228 (+)
CAST/EiJ	MGP_CASTEiJ_G0035883	sense intronic lncRNA gene	Chr5:28072606-28075494 (+)
CBA/J	MGP_CBAJ_G0036670	sense intronic lncRNA gene	Chr5:31121725-31124536 (+)
DBA/2J	MGP_DBA2J_G0036845	sense intronic lncRNA gene	Chr5:28019913-28022770 (+)
FVB/NJ	MGP_FVBNJ_G0036795	sense intronic lncRNA gene	Chr5:27432559-27435416 (+)
LP/J	MGP_LPJ_G0036892	sense intronic lncRNA gene	Chr5:29233131-29236001 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036802	sense intronic lncRNA gene	Chr5:32014038-32016773 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037638	sense intronic lncRNA gene	Chr5:28487530-28490387 (+)
PWK/PhJ	MGP_PWKPhJ_G0035575	sense intronic lncRNA gene	Chr5:27132818-27135676 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035384	sense intronic lncRNA gene	Chr5:27875213-27878075 (-)
WSB/EiJ	MGP_WSBEiJ_G0036083	sense intronic lncRNA gene	Chr5:28552352-28555221 (+)

Homology

• Gene Tree
  Gm19409
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm19409
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000106229 (Evidence)
• NCBI Gene
  100502845

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106229	Ensembl Gene Model | MGI Sequence Detail	2858	C57BL/6J
transcript	ENSMUST00000198244	Ensembl | MGI Sequence Detail	2858	Not Applicable
polypeptide	Q3UVF0	UniProt | EBI | MGI Sequence Detail	100	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105