Mir5122 Gene Detail

Summary

• Symbol
  Mir5122
• Name
  microRNA 5122
• Synonyms
  mmu-mir-5122

• Feature Type
  miRNA gene
• IDs
  MGI:4950447
  NCBI Gene: 100628620
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:133097087-133097175 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 66.25 cM

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950447	miRNA gene	Chr4:133097087-133097175 (+)
129S1/SvImJ	ENSMUSG00200021283	miRNA gene	Chr4:126534585-126534673 (+)
A/J	ENSMUSG00195046155	miRNA gene	Chr4:127869617-127869705 (+)
AKR/J	ENSMUSG00220048718	miRNA gene	Chr4:126861403-126861491 (+)
BALB/cJ	ENSMUSG00180049660	miRNA gene	Chr4:125503358-125503446 (+)
C3H/HeJ	ENSMUSG00175049118	miRNA gene	Chr4:126515673-126515761 (+)
C57BL/6NJ	ENSMUSG00215052469	miRNA gene	Chr4:128027851-128027939 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007904	miRNA gene	Chr4:123018152-123018240 (+)
CAST/EiJ	ENSTCUG00005047866	miRNA gene	Chr4:127421106-127421194 (+)
CBA/J	ENSMUSG00210054036	miRNA gene	Chr4:126144661-126144749 (+)
DBA/2J	ENSMUSG00185053680	miRNA gene	Chr4:127676900-127676988 (+)
FVB/NJ	ENSMUSG00205049022	miRNA gene	Chr4:125922797-125922885 (+)
JF1/MsJ	ENSUMUG00000047379	miRNA gene	Chr4:128348992-128349080 (+)
LP/J	ENSMUSG00230038586	miRNA gene	Chr4:131473002-131473090 (+)
NOD/ShiLtJ	ENSMUSG00190049911	miRNA gene	Chr4:125909262-125909350 (+)
NZO/HlLtJ	ENSMUSG00225026955	miRNA gene	Chr4:137393897-137393985 (+)
PWK/PhJ	ENSLUMG00010050279	miRNA gene	Chr4:125360873-125360961 (+)
SPRET/EiJ	ENSMSPG00010046802	miRNA gene	Chr4:127433327-127433415 (+)
WSB/EiJ	ENSIUOG00005045023	miRNA gene	Chr4:125801064-125801152 (+)

Homology

• Gene Tree
  Mir5122
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Mir5122
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000092745 (Evidence)
• NCBI Gene
  100628620

Representative Sequences			Length	Strain/Species
genomic	100628620	NCBI Gene Model | MGI Sequence Detail	89	C57BL/6J
transcript	NR_039582	RefSeq | MGI Sequence Detail	89	ZRU/MplStud

Other Database
Links

miRBase

MI0018031

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir5122:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39477	Chr4:133097076-133097091 (+)	-3 bp