Mir5114 Gene Detail

Summary

• Symbol
  Mir5114
• Name
  microRNA 5114
• Synonyms
  mmu-mir-5114

• Feature Type
  miRNA gene
• IDs
  MGI:4950434
  NCBI Gene: 100628619
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr19:44291610-44291670 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 37.98 cM

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950434	miRNA gene	Chr19:44291610-44291670 (+)
129S1/SvImJ	ENSMUSG00200021826	miRNA gene	Chr19:41003150-41003210 (+)
A/J	ENSMUSG00195017835	miRNA gene	Chr19:41134571-41134631 (+)
AKR/J	ENSMUSG00220019339	miRNA gene	Chr19:40930182-40930242 (+)
BALB/cJ	ENSMUSG00180022059	miRNA gene	Chr19:41386954-41387014 (+)
C3H/HeJ	ENSMUSG00175006414	miRNA gene	Chr19:40919204-40919264 (+)
C57BL/6NJ	ENSMUSG00215005107	miRNA gene	Chr19:40981879-40981939 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007644	miRNA gene	Chr19:40967428-40967488 (+)
CAST/EiJ	ENSTCUG00005016911	miRNA gene	Chr19:40565424-40565484 (+)
CBA/J	ENSMUSG00210019230	miRNA gene	Chr19:40998882-40998942 (+)
DBA/2J	ENSMUSG00185009408	miRNA gene	Chr19:41510633-41510693 (+)
FVB/NJ	ENSMUSG00205038241	miRNA gene	Chr19:40426666-40426726 (+)
JF1/MsJ	ENSUMUG00000047758	miRNA gene	Chr19:41652771-41652831 (+)
LP/J	ENSMUSG00230025609	miRNA gene	Chr19:42273092-42273152 (+)
NOD/ShiLtJ	ENSMUSG00190005578	miRNA gene	Chr19:40860394-40860454 (+)
NZO/HlLtJ	ENSMUSG00225044489	miRNA gene	Chr19:45866883-45866943 (+)
PWK/PhJ	ENSLUMG00010001289	miRNA gene	Chr19:40822133-40822193 (+)
SPRET/EiJ	ENSMSPG00010007732	miRNA gene	Chr19:40570570-40570630 (+)
WSB/EiJ	ENSIUOG00005006791	miRNA gene	Chr19:40376117-40376177 (+)

Homology

• Gene Tree
  Mir5114
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093315 (Evidence)
• NCBI Gene
  100628619

Representative Sequences			Length	Strain/Species
genomic	100628619	NCBI Gene Model | MGI Sequence Detail	61	C57BL/6J
transcript	NR_039574	RefSeq | MGI Sequence Detail	61	ZRU/MplStud

Other Database
Links

miRBase

MI0018023

References

• Summaries
  All 5
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir5114:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156581	Chr19:44289716-44289736 (+)	-1,884 bp
Tssr156582	Chr19:44289790-44289837 (+)	-1,796 bp
Tssr156583	Chr19:44291435-44291451 (+)	-167 bp
Tssr156584	Chr19:44291640-44291657 (+)	39 bp