Mir5103 Gene Detail

Summary

• Symbol
  Mir5103
• Name
  microRNA 5103
• Synonyms
  mmu-mir-5103

• Feature Type
  miRNA gene
• IDs
  MGI:4950423
  NCBI Gene: 100628580
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:34472202-34472280 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 13.22 cM

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950423	miRNA gene	Chr1:34472202-34472280 (-)
129S1/SvImJ	ENSMUSG00200005013	miRNA gene	Chr1:32009552-32009630 (-)
A/J	ENSMUSG00195045372	miRNA gene	Chr1:31685612-31685690 (-)
AKR/J	ENSMUSG00220009965	miRNA gene	Chr1:31711738-31711816 (-)
BALB/cJ	ENSMUSG00180012293	miRNA gene	Chr1:31797737-31797815 (-)
C3H/HeJ	ENSMUSG00175001563	miRNA gene	Chr1:31689907-31689985 (-)
C57BL/6NJ	ENSMUSG00215032077	miRNA gene	Chr1:31774741-31774819 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003330	miRNA gene	Chr1:31836709-31836787 (-)
CBA/J	ENSMUSG00210006780	miRNA gene	Chr1:31535658-31535736 (-)
DBA/2J	ENSMUSG00185010861	miRNA gene	Chr1:32599869-32599947 (-)
FVB/NJ	ENSMUSG00205040398	miRNA gene	Chr1:31715366-31715444 (-)
JF1/MsJ	ENSUMUG00000025248	miRNA gene	Chr1:31807415-31807493 (-)
LP/J	ENSMUSG00230027578	miRNA gene	Chr1:32651702-32651780 (-)
NOD/ShiLtJ	ENSMUSG00190041994	miRNA gene	Chr1:31695203-31695281 (-)
NZO/HlLtJ	ENSMUSG00225014536	miRNA gene	Chr1:35920186-35920264 (-)
PWK/PhJ	ENSLUMG00010037958	miRNA gene	Chr1:31379378-31379456 (-)
SPRET/EiJ	ENSMSPG00010031711	miRNA gene	Chr1:32786034-32786112 (-)
WSB/EiJ	ENSIUOG00005039931	miRNA gene	Chr1:31699335-31699413 (-)

Homology

• Gene Tree
  Mir5103
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir5103
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000092852 (Evidence)
• NCBI Gene
  100628580

Representative Sequences			Length	Strain/Species
genomic	100628580	NCBI Gene Model | MGI Sequence Detail	79	C57BL/6J
transcript	NR_039562	RefSeq | MGI Sequence Detail	79	ZRU/MplStud

Other Database
Links

miRBase

MI0018011

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4

TSS for Mir5103:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11217	Chr1:34472330-34472379 (-)	-75 bp