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Mir5100 Gene Detail
Summary
  • Symbol
    Mir5100
  • Name
    microRNA 5100
  • Synonyms
    mmu-mir-5100
Location &
Maps
more
  • Sequence Map
    Chr11:60619489-60619552 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 37.81 cM
Strain
Comparison
more
  • SNPs within 2kb
    22 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4950420
miRNA gene Chr11:60619489-60619552 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007816
miRNA gene Chr11:60643139-60643202 (+)
A/J MGP_AJ_G0007812
miRNA gene Chr11:58411652-58411715 (+)
AKR/J MGP_AKRJ_G0007786
miRNA gene Chr11:60265226-60265289 (+)
BALB/cJ MGP_BALBcJ_G0007789
miRNA gene Chr11:58708624-58708687 (+)
C3H/HeJ MGP_C3HHeJ_G0007736
miRNA gene Chr11:60199648-60199711 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007967
miRNA gene Chr11:62564142-62564205 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0007112
miRNA gene Chr11:55554928-55554991 (+)
CAST/EiJ MGP_CASTEiJ_G0007629
miRNA gene Chr11:60297065-60297128 (+)
CBA/J MGP_CBAJ_G0007707
miRNA gene Chr11:65287367-65287430 (+)
DBA/2J MGP_DBA2J_G0007743
miRNA gene Chr11:57998179-57998242 (+)
FVB/NJ MGP_FVBNJ_G0007760
miRNA gene Chr11:57660396-57660459 (+)
LP/J MGP_LPJ_G0007820
miRNA gene Chr11:61222575-61222638 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007730
miRNA gene Chr11:66342963-66343026 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007965
miRNA gene Chr11:60355772-60355835 (+)
PWK/PhJ MGP_PWKPhJ_G0007558
miRNA gene Chr11:58575696-58575759 (+)
SPRET/EiJ MGP_SPRETEiJ_G0007454
miRNA gene Chr11:60174393-60174456 (+)
WSB/EiJ MGP_WSBEiJ_G0007697
miRNA gene Chr11:59977785-59977848 (+)



Homology
less
Human Diseases
less
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 100628625 NCBI Gene Model | MGI Sequence Detail 64 C57BL/6J ±  kb
transcript NR_039559 RefSeq | MGI Sequence Detail 64 C57BL/6  
For the selected sequence
Other Database
Links
less
miRBase MI0018008
References
more
  • Summaries
    All 19
    Diseases 2
    Gene Ontology 2
    Phenotypes 13
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:222099 Li CJ, et al., MicroRNA-188 regulates age-related switch between osteoblast and adipocyte differentiation. J Clin Invest. 2015 Apr;125(4):1509-22

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/22/2022
MGI 6.22
The Jackson Laboratory