Mir3966 Gene Detail

Summary

• Symbol
  Mir3966
• Name
  microRNA 3966
• Synonyms
  mmu-mir-3966

• Feature Type
  miRNA gene
• IDs
  MGI:4950405
  NCBI Gene: 100628616
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:97259340-97259424 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 50.25 cM

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4950405	miRNA gene	Chr10:97259340-97259424 (+)
129S1/SvImJ	ENSMUSG00200020483	miRNA gene	Chr10:93768973-93769057 (+)
A/J	ENSMUSG00195015787	miRNA gene	Chr10:94200594-94200678 (+)
AKR/J	ENSMUSG00220025713	miRNA gene	Chr10:93767103-93767187 (+)
BALB/cJ	ENSMUSG00180010138	miRNA gene	Chr10:94208469-94208553 (+)
C3H/HeJ	ENSMUSG00175006053	miRNA gene	Chr10:94103194-94103278 (+)
C57BL/6NJ	ENSMUSG00215006612	miRNA gene	Chr10:93791940-93792024 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007055	miRNA gene	Chr10:91103883-91103967 (+)
CAST/EiJ	ENSTCUG00005005916	miRNA gene	Chr10:93508612-93508696 (+)
CBA/J	ENSMUSG00210022812	miRNA gene	Chr10:93933388-93933472 (+)
DBA/2J	ENSMUSG00185019566	miRNA gene	Chr10:94150654-94150738 (+)
FVB/NJ	ENSMUSG00205003837	miRNA gene	Chr10:93859490-93859574 (+)
JF1/MsJ	ENSUMUG00000032123	miRNA gene	Chr10:95603042-95603126 (+)
LP/J	ENSMUSG00230022020	miRNA gene	Chr10:96061324-96061408 (+)
NOD/ShiLtJ	ENSMUSG00190024949	miRNA gene	Chr10:94183070-94183154 (+)
NZO/HlLtJ	ENSMUSG00225021878	miRNA gene	Chr10:100301009-100301093 (+)
PWK/PhJ	ENSLUMG00010005844	miRNA gene	Chr10:93866344-93866428 (+)
SPRET/EiJ	ENSMSPG00010010962	miRNA gene	Chr10:95527511-95527595 (+)
WSB/EiJ	ENSIUOG00005013411	miRNA gene	Chr10:93899792-93899876 (+)

Homology

• Gene Tree
  Mir3966
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir3966
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105557 (Evidence)
• NCBI Gene
  100628616

Representative Sequences			Length	Strain/Species
genomic	100628616	NCBI Gene Model | MGI Sequence Detail	85	C57BL/6J
transcript	NR_039547	RefSeq | MGI Sequence Detail	85	ZRU/MplStud

Other Database
Links

miRBase

MI0016975

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4