Gm17233 Gene Detail

Summary

• Symbol
  Gm17233
• Name
  predicted gene 17233

• Feature Type
  lncRNA gene
• IDs
  MGI:4938060
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:73411260-73424761 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 38.72 cM

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938060	lncRNA gene	Chr14:73411260-73424761 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015276	unclassified non-coding RNA gene	Chr14:67918188-67931608 (-)
A/J	MGP_AJ_G0015250	unclassified non-coding RNA gene	Chr14:66429292-66442810 (-)
AKR/J	MGP_AKRJ_G0015213	unclassified non-coding RNA gene	Chr14:68385267-68398694 (-)
BALB/cJ	MGP_BALBcJ_G0015214	unclassified non-coding RNA gene	Chr14:66196197-66209624 (-)
C3H/HeJ	MGP_C3HHeJ_G0015038	unclassified non-coding RNA gene	Chr14:68104888-68118399 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015669	unclassified non-coding RNA gene	Chr14:70906516-70920008 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013410	unclassified non-coding RNA gene	Chr14:64153631-64167122 (-)
CAST/EiJ	MGP_CASTEiJ_G0014589	unclassified non-coding RNA gene	Chr14:64770383-64783545 (-)
CBA/J	MGP_CBAJ_G0015018	unclassified non-coding RNA gene	Chr14:73135734-73149158 (-)
DBA/2J	MGP_DBA2J_G0015111	unclassified non-coding RNA gene	Chr14:65812167-65825594 (-)
FVB/NJ	MGP_FVBNJ_G0015119	unclassified non-coding RNA gene	Chr14:65195424-65209932 (-)
LP/J	MGP_LPJ_G0015192	unclassified non-coding RNA gene	Chr14:69088016-69101473 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015146	unclassified non-coding RNA gene	Chr14:71968142-71981655 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015708	unclassified non-coding RNA gene	Chr14:67653274-67666759 (-)
PWK/PhJ	MGP_PWKPhJ_G0014381	unclassified non-coding RNA gene	Chr14:62585183-62598932 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014168	unclassified non-coding RNA gene	Chr14:63624335-63637500 (-)
WSB/EiJ	MGP_WSBEiJ_G0014696	unclassified non-coding RNA gene	Chr14:68007747-68021267 (-)

Homology

• Gene Tree
  Gm17233
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving Gm17233
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090706 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090706	Ensembl Gene Model | MGI Sequence Detail	13502	C57BL/6J
transcript	ENSMUST00000168470	Ensembl | MGI Sequence Detail	698	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17233:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129695	Chr14:73418226-73418237 (-)	6,529 bp