Gm17197 Gene Detail

Summary

• Symbol
  Gm17197
• Name
  predicted gene 17197

• Feature Type
  lncRNA gene
• IDs
  MGI:4938024
  NCBI Gene: 102634685
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:56352694-56354673 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 51.82 cM

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938024	lncRNA gene	Chr19:56345117-56354810 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003488	antisense lncRNA gene	Chr19:56707407-56709385 (+)
A/J	MGP_AJ_G0003468	antisense lncRNA gene	Chr19:53905545-53907524 (+)
AKR/J	MGP_AKRJ_G0003447	antisense lncRNA gene	Chr19:55604734-55606712 (+)
BALB/cJ	MGP_BALBcJ_G0003457	antisense lncRNA gene	Chr19:53993512-53995491 (+)
C3H/HeJ	MGP_C3HHeJ_G0003405	antisense lncRNA gene	Chr19:55845037-55847017 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003595	antisense lncRNA gene	Chr19:58070427-58072406 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003105	antisense lncRNA gene	Chr19:52832239-52834205 (+)
CAST/EiJ	MGP_CASTEiJ_G0003368	antisense lncRNA gene	Chr19:55858774-55862472 (+)
CBA/J	MGP_CBAJ_G0003402	antisense lncRNA gene	Chr19:60946050-60948030 (+)
DBA/2J	MGP_DBA2J_G0003410	antisense lncRNA gene	Chr19:53699897-53701877 (+)
FVB/NJ	MGP_FVBNJ_G0003429	antisense lncRNA gene	Chr19:53404113-53406092 (+)
LP/J	MGP_LPJ_G0003483	antisense lncRNA gene	Chr19:56572925-56574903 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003417	antisense lncRNA gene	Chr19:60252865-60254843 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003598	antisense lncRNA gene	Chr19:55821899-55823877 (+)
PWK/PhJ	MGP_PWKPhJ_G0003324	antisense lncRNA gene	Chr19:53651666-53653797 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003269	antisense lncRNA gene	Chr19:54493927-54495914 (+)
WSB/EiJ	MGP_WSBEiJ_G0003403	antisense lncRNA gene	Chr19:55951414-55953392 (+)

Homology

• Gene Tree
  Gm17197
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000090990 (Evidence)
• NCBI Gene
  102634685

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090990	Ensembl Gene Model | MGI Sequence Detail	1980	C57BL/6J
transcript	ENSMUST00000163160	Ensembl | MGI Sequence Detail	452	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm17197:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157179	Chr19:56351253-56351256 (+)	-1,439 bp