Gm17173 Gene Detail

Summary

• Symbol
  Gm17173
• Name
  predicted gene 17173

• Feature Type
  lncRNA gene
• IDs
  MGI:4938000
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:45209725-45244357 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.67 cM

Strain
Comparison

• SNPs within 2kb
  328 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938000	lncRNA gene	Chr14:45209725-45244357 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003239	antisense lncRNA gene	Chr14:38571329-38618449 (-)
A/J	MGP_AJ_G0003215	antisense lncRNA gene	Chr14:37418541-37454488 (-)
AKR/J	MGP_AKRJ_G0003198	antisense lncRNA gene	Chr14:38918549-38958341 (-)
BALB/cJ	MGP_BALBcJ_G0003202	antisense lncRNA gene	Chr14:37477489-37515162 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0003346	antisense lncRNA gene	Chr14:40250736-40288557 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002871	antisense lncRNA gene	Chr14:36873875-36907739 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0003178	antisense lncRNA gene	Chr14:37117781-37153505 (-)
LP/J	MGP_LPJ_G0003236	antisense lncRNA gene	Chr14:38883413-38916916 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0003346	antisense lncRNA gene	Chr14:38458450-38495380 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17173
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm17173
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000090709 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090709	Ensembl Gene Model | MGI Sequence Detail	34633	C57BL/6J
transcript	ENSMUST00000168000	Ensembl | MGI Sequence Detail	2867	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;