Gm17160 Gene Detail

Summary

• Symbol
  Gm17160
• Name
  predicted gene 17160

• Feature Type
  lncRNA gene
• IDs
  MGI:4937987
  NCBI Gene: 115488189
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:102898943-102901293 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 54.94 cM

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937987	lncRNA gene	Chr13:102898821-102904700 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003212	antisense lncRNA gene	Chr13:104819635-104823281 (+)
A/J	MGP_AJ_G0003188	antisense lncRNA gene	Chr13:100730463-100732711 (+)
AKR/J	MGP_AKRJ_G0003170	antisense lncRNA gene	Chr13:103794534-103797665 (+)
BALB/cJ	MGP_BALBcJ_G0003175	antisense lncRNA gene	Chr13:101441452-101445699 (+)
C3H/HeJ	MGP_C3HHeJ_G0003131	antisense lncRNA gene	Chr13:103531875-103535193 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003318	antisense lncRNA gene	Chr13:107959448-107961607 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002845	antisense lncRNA gene	Chr13:96392698-96394831 (+)
CAST/EiJ	MGP_CASTEiJ_G0003097	antisense lncRNA gene	Chr13:102990960-102993133 (+)
CBA/J	MGP_CBAJ_G0003128	antisense lncRNA gene	Chr13:112195521-112199811 (+)
DBA/2J	MGP_DBA2J_G0003133	antisense lncRNA gene	Chr13:100495036-100497418 (+)
FVB/NJ	MGP_FVBNJ_G0003151	antisense lncRNA gene	Chr13:99188926-99191406 (+)
LP/J	MGP_LPJ_G0003209	antisense lncRNA gene	Chr13:104838620-104842500 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003142	antisense lncRNA gene	Chr13:112385832-112389133 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003319	antisense lncRNA gene	Chr13:103266829-103269023 (+)
PWK/PhJ	MGP_PWKPhJ_G0003055	antisense lncRNA gene	Chr13:99234027-99236791 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003001	antisense lncRNA gene	Chr13:99486725-99489868 (+)
WSB/EiJ	MGP_WSBEiJ_G0003131	antisense lncRNA gene	Chr13:103732167-103735812 (+)

Homology

• Gene Tree
  Gm17160
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  4

• Ensembl
  ENSMUSG00000090329 (Evidence)
• NCBI Gene
  115488189

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090329	Ensembl Gene Model | MGI Sequence Detail	2351	C57BL/6J
transcript	ENSMUST00000170645	Ensembl | MGI Sequence Detail	260	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm17160:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4156	Chr13:102898922-102898949 (+)	-7 bp