Gm17130 Gene Detail

Summary

• Symbol
  Gm17130
• Name
  predicted gene 17130

• Feature Type
  lncRNA gene
• IDs
  MGI:4937957
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:32163321-32168207 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 17.33 cM

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937957	lncRNA gene	Chr5:32163321-32168207 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004053	antisense lncRNA gene	Chr5:30064051-30068938 (-)
A/J	MGP_AJ_G0004033	antisense lncRNA gene	Chr5:29077374-29082261 (-)
AKR/J	MGP_AKRJ_G0004012	antisense lncRNA gene	Chr5:30239232-30244119 (-)
BALB/cJ	MGP_BALBcJ_G0004020	antisense lncRNA gene	Chr5:29605827-29610714 (-)
C3H/HeJ	MGP_C3HHeJ_G0003966	antisense lncRNA gene	Chr5:30255418-30260305 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004168	antisense lncRNA gene	Chr5:31872514-31877400 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003648	antisense lncRNA gene	Chr5:26745937-26750799 (-)
CAST/EiJ	MGP_CASTEiJ_G0003929	antisense lncRNA gene	Chr5:29335191-29340071 (-)
CBA/J	MGP_CBAJ_G0003960	antisense lncRNA gene	Chr5:32534774-32539661 (-)
DBA/2J	MGP_DBA2J_G0003974	antisense lncRNA gene	Chr5:29248848-29253734 (-)
FVB/NJ	MGP_FVBNJ_G0003994	antisense lncRNA gene	Chr5:28655179-28660147 (-)
LP/J	MGP_LPJ_G0004055	antisense lncRNA gene	Chr5:30507392-30512279 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003982	antisense lncRNA gene	Chr5:33344460-33349346 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004163	antisense lncRNA gene	Chr5:29739017-29743904 (-)
PWK/PhJ	MGP_PWKPhJ_G0003883	antisense lncRNA gene	Chr5:28403350-28408236 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003828	antisense lncRNA gene	Chr5:29214271-29219118 (-)
WSB/EiJ	MGP_WSBEiJ_G0003965	antisense lncRNA gene	Chr5:29821536-29826422 (-)

Homology

• Gene Tree
  Gm17130
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm17130
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106894 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106894	Ensembl Gene Model | MGI Sequence Detail	4887	C57BL/6J
transcript	ENSMUST00000201542	Ensembl | MGI Sequence Detail	2683	Not Applicable

References

• Summaries
  All 23

  Diseases 1

  Phenotypes 21
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707