Gm17119 Pseudogene Detail

Summary

• Symbol
  Gm17119
• Name
  predicted gene 17119

• Feature Type
  pseudogene
• IDs
  MGI:4937946
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:14629462-14629741 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 3.09 cM

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937946	pseudogene	Chr3:14629462-14629741 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039700	pseudogene	Chr3:11687735-11688014 (+)
A/J	MGP_AJ_G0039698	pseudogene	Chr3:11682775-11683054 (+)
AKR/J	MGP_AKRJ_G0039624	pseudogene	Chr3:11667042-11667321 (+)
BALB/cJ	MGP_BALBcJ_G0039668	pseudogene	Chr3:11419232-11419511 (+)
C3H/HeJ	MGP_C3HHeJ_G0039330	pseudogene	Chr3:11992875-11993154 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040229	pseudogene	Chr3:12491701-12491980 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036861	pseudogene	Chr3:10011530-10011809 (+)
CAST/EiJ	MGP_CASTEiJ_G0038451	pseudogene	Chr3:11984974-11985253 (+)
CBA/J	MGP_CBAJ_G0039301	pseudogene	Chr3:12687622-12687901 (+)
DBA/2J	MGP_DBA2J_G0039495	pseudogene	Chr3:11251400-11251679 (+)
FVB/NJ	MGP_FVBNJ_G0039453	pseudogene	Chr3:11077623-11077902 (+)
LP/J	MGP_LPJ_G0039534	pseudogene	Chr3:12266658-12266937 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039455	pseudogene	Chr3:14456029-14456308 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040330	pseudogene	Chr3:11482487-11482766 (+)
PWK/PhJ	MGP_PWKPhJ_G0038127	pseudogene	Chr3:11365827-11366106 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037876	pseudogene	Chr3:11531294-11531573 (+)
WSB/EiJ	MGP_WSBEiJ_G0038684	pseudogene	Chr3:11542607-11542886 (+)

Homology

• Gene Tree
  Gm17119
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090300 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090300	Ensembl Gene Model | MGI Sequence Detail	280	C57BL/6J
transcript	ENSMUST00000163943	Ensembl | MGI Sequence Detail	280	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;