Gm17080 Gene Detail

Summary

• Symbol
  Gm17080
• Name
  predicted gene 17080

• Feature Type
  lncRNA gene
• IDs
  MGI:4937907
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:45897046-45899303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 22.59 cM

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937907	lncRNA gene	Chr17:45897046-45899303 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003410	antisense lncRNA gene	Chr17:46605426-46607679 (+)
A/J	MGP_AJ_G0003388	antisense lncRNA gene	Chr17:45492842-45495098 (+)
AKR/J	MGP_AKRJ_G0003369	antisense lncRNA gene	Chr17:45807127-45809389 (+)
BALB/cJ	MGP_BALBcJ_G0003377	antisense lncRNA gene	Chr17:45380922-45383738 (+)
C3H/HeJ	MGP_C3HHeJ_G0003327	antisense lncRNA gene	Chr17:46516223-46519205 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003517	antisense lncRNA gene	Chr17:48618800-48621057 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003031	antisense lncRNA gene	Chr17:42287671-42289944 (+)
CAST/EiJ	MGP_CASTEiJ_G0003289	antisense lncRNA gene	Chr17:46622269-46624523 (+)
CBA/J	MGP_CBAJ_G0003323	antisense lncRNA gene	Chr17:50346857-50349104 (+)
DBA/2J	MGP_DBA2J_G0003332	antisense lncRNA gene	Chr17:44285505-44287762 (+)
FVB/NJ	MGP_FVBNJ_G0003350	antisense lncRNA gene	Chr17:43859131-43861665 (+)
LP/J	MGP_LPJ_G0003404	antisense lncRNA gene	Chr17:47251185-47253441 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003338	antisense lncRNA gene	Chr17:49915807-49918064 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003519	antisense lncRNA gene	Chr17:46170495-46172759 (+)
PWK/PhJ	MGP_PWKPhJ_G0003248	antisense lncRNA gene	Chr17:43590088-43592861 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003193	antisense lncRNA gene	Chr17:43033303-43035544 (+)
WSB/EiJ	MGP_WSBEiJ_G0003326	antisense lncRNA gene	Chr17:46687956-46690198 (+)

Homology

• Gene Tree
  Gm17080
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000067389 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000067389	Ensembl Gene Model | MGI Sequence Detail	2258	C57BL/6J
transcript	ENSMUST00000087588	Ensembl | MGI Sequence Detail	811	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;