Gm17039 Gene Detail

Summary

• Symbol
  Gm17039
• Name
  predicted gene 17039

• Feature Type
  lncRNA gene
• IDs
  MGI:4937866
  NCBI Gene: 102636903
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:67508790-67513798 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.54 cM

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937866	lncRNA gene	Chr13:67508784-67513801 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003195	antisense lncRNA gene	Chr13:67506176-67514338 (+)
A/J	MGP_AJ_G0003171	antisense lncRNA gene	Chr13:65032518-65049990 (+)
AKR/J	MGP_AKRJ_G0003153	antisense lncRNA gene	Chr13:67189079-67228692 (+)
BALB/cJ	MGP_BALBcJ_G0003158	antisense lncRNA gene	Chr13:65513971-65520313 (+)
C3H/HeJ	MGP_C3HHeJ_G0003114	antisense lncRNA gene	Chr13:66824864-66883611 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003300	antisense lncRNA gene	Chr13:69884121-69900607 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002827	antisense lncRNA gene	Chr13:62668955-62675917 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0003111	antisense lncRNA gene	Chr13:72350917-72395870 (+)
DBA/2J	MGP_DBA2J_G0003116	antisense lncRNA gene	Chr13:64931147-64939006 (+)
FVB/NJ	MGP_FVBNJ_G0003134	antisense lncRNA gene	Chr13:63936564-63943966 (+)
LP/J	MGP_LPJ_G0003192	antisense lncRNA gene	Chr13:67738612-67751371 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003125	antisense lncRNA gene	Chr13:71177747-71183747 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003301	antisense lncRNA gene	Chr13:66453448-66459771 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0002985	antisense lncRNA gene	Chr13:63505984-63569698 (+)
WSB/EiJ	MGP_WSBEiJ_G0003113	antisense lncRNA gene	Chr13:66929347-66940195 (+)

Homology

• Gene Tree
  Gm17039
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  4
• Genomic Mutations
  1 involving Gm17039
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000092103 (Evidence)
• NCBI Gene
  102636903

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092103	Ensembl Gene Model | MGI Sequence Detail	5009	C57BL/6J
transcript	ENSMUST00000165145	Ensembl | MGI Sequence Detail	4901	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14