Pate10 Gene Detail

Summary

• Symbol
  Pate10
• Name
  prostate and testis expressed 10
• Synonyms
  Gm17677

• Feature Type
  protein coding gene
• IDs
  MGI:4937311
  NCBI Gene: 100312949
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:35652345-35653548 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 20.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937311	protein coding gene	Chr9:35652256-35653866 (+)
129S1/SvImJ	ENSMUSG00200037704	protein coding gene	Chr9:32631323-32632526 (+)
A/J	ENSMUSG00195046643	protein coding gene	Chr9:32422767-32423970 (+)
AKR/J	ENSMUSG00220045609	protein coding gene	Chr9:32464239-32465440 (+)
BALB/cJ	ENSMUSG00180042749	protein coding gene	Chr9:32551066-32552269 (+)
C3H/HeJ	ENSMUSG00175045567	protein coding gene	Chr9:32552259-32553462 (+)
C57BL/6NJ	ENSMUSG00215027699	protein coding gene	Chr9:32552017-32553220 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031963	protein coding gene	Chr9:31354166-31355360 (+)
CAST/EiJ	ENSTCUG00005043083	protein coding gene	Chr9:32521599-32522804 (+)
CBA/J	ENSMUSG00210044172	protein coding gene	Chr9:32563306-32564508 (+)
DBA/2J	ENSMUSG00185036465	protein coding gene	Chr9:32604198-32605399 (+)
FVB/NJ	ENSMUSG00205032119	protein coding gene	Chr9:32913698-32914901 (+)
JF1/MsJ	ENSUMUG00000039579	protein coding gene	Chr9:32785648-32786853 (+)
LP/J	ENSMUSG00230029422	protein coding gene	Chr9:33026106-33027311 (+)
NOD/ShiLtJ	ENSMUSG00190021139	protein coding gene	Chr9:32681690-32682891 (+)
NZO/HlLtJ	ENSMUSG00225020746	protein coding gene	Chr9:32994172-32995377 (+)
PWK/PhJ	ENSLUMG00010039122	protein coding gene	Chr9:32680785-32681987 (+)
SPRET/EiJ	ENSMSPG00010032670	protein coding gene	Chr9:33115636-33116836 (+)
WSB/EiJ	ENSIUOG00005041471	protein coding gene	Chr9:32166239-32167440 (+)

Homology

• MGI Vertebrate Homology
  Pate10 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Pate10
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  2
• Genomic Mutations
  1 involving Pate10
• Find Mice (IMSR)
  12 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS52758.1

• Ensembl
  ENSMUSG00000091174 (Evidence)
• NCBI Gene
  100312949

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091174	Ensembl Gene Model | MGI Sequence Detail	1204	C57BL/6J
transcript	ENSMUST00000166746	Ensembl | MGI Sequence Detail	351	Not Applicable
polypeptide	ENSMUSP00000132657	Ensembl | MGI Sequence Detail	116	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR059168 PATE2-like, ECD 3FTx domain

Other
Accession IDs

MGI:6278529

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:138601 Levitin F, et al., PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR proteins that are expressed in reproductive and neuron-rich tissues and possess neuromodulatory activity. J Biol Chem. 2008 Jun 13;283(24):16928-39
• Latest
  J:369525 Noda T, et al., Multiple genes in the Pate5-13 genomic region contribute to ADAM3 processing. Biol Reprod. 2024 Jan 13;

TSS for Pate10:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84354	Chr9:35652198-35652203 (+)	-144 bp
Tssr84355	Chr9:35652253-35652262 (+)	-87 bp
Tssr84356	Chr9:35652266-35652267 (+)	-78 bp
Tssr84357	Chr9:35652278-35652285 (+)	-63 bp
Tssr84358	Chr9:35652326-35652330 (+)	-17 bp