Pate10 Gene Detail

Summary

• Symbol
  Pate10
• Name
  prostate and testis expressed 10
• Synonyms
  Gm17677

• Feature Type
  protein coding gene
• IDs
  MGI:4937311
  NCBI Gene: 100312949
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:35652345-35653548 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 20.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937311	protein coding gene	Chr9:35652256-35653866 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034543	protein coding gene	Chr9:33553017-33554220 (+)
A/J	MGP_AJ_G0034521	protein coding gene	Chr9:32701939-32703142 (+)
AKR/J	MGP_AKRJ_G0034447	protein coding gene	Chr9:33423647-33424848 (+)
BALB/cJ	MGP_BALBcJ_G0034512	protein coding gene	Chr9:32603176-32604379 (+)
C3H/HeJ	MGP_C3HHeJ_G0034224	protein coding gene	Chr9:33763415-33764618 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035033	protein coding gene	Chr9:34685698-34686901 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031963	protein coding gene	Chr9:31354166-31355360 (+)
CAST/EiJ	MGP_CASTEiJ_G0033547	protein coding gene	Chr9:33658132-33659337 (+)
CBA/J	MGP_CBAJ_G0034198	protein coding gene	Chr9:35849980-35851182 (+)
DBA/2J	MGP_DBA2J_G0034355	protein coding gene	Chr9:32672185-32673386 (+)
FVB/NJ	MGP_FVBNJ_G0034298	protein coding gene	Chr9:32086390-32087593 (+)
LP/J	MGP_LPJ_G0034441	protein coding gene	Chr9:33812279-33813484 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034342	protein coding gene	Chr9:37435165-37436366 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035053	protein coding gene	Chr9:33378069-33379274 (+)
PWK/PhJ	MGP_PWKPhJ_G0033252	protein coding gene	Chr9:32659104-32660306 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033087	protein coding gene	Chr9:33653337-33654537 (+)
WSB/EiJ	MGP_WSBEiJ_G0033662	protein coding gene	Chr9:33153518-33154719 (+)

Homology

• Alliance of Genome Resources
  Pate10 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Pate10
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Pate10
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  672

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS52758.1

• Ensembl
  ENSMUSG00000091174 (Evidence)
• NCBI Gene
  100312949

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091174	Ensembl Gene Model | MGI Sequence Detail	1204	C57BL/6J
transcript	ENSMUST00000166746	Ensembl | MGI Sequence Detail	351	Not Applicable
polypeptide	ENSMUSP00000132657	Ensembl | MGI Sequence Detail	116	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:138601 Levitin F, et al., PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR proteins that are expressed in reproductive and neuron-rich tissues and possess neuromodulatory activity. J Biol Chem. 2008 Jun 13;283(24):16928-39
• Latest
  J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506

TSS for Pate10:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84354	Chr9:35652198-35652203 (+)	-144 bp
Tssr84355	Chr9:35652253-35652262 (+)	-87 bp
Tssr84356	Chr9:35652266-35652267 (+)	-78 bp
Tssr84357	Chr9:35652278-35652285 (+)	-63 bp
Tssr84358	Chr9:35652326-35652330 (+)	-17 bp