Trav5n-3 Pseudogene Detail

Summary

• Symbol
  Trav5n-3
• Name
  T cell receptor alpha variable 5N-3
• Synonyms
  Gm17648

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4937282
  NCBI Gene: 100126455
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53476741-53477010 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937282	pseudogenic gene segment	Chr14:53476741-53477020 (+)
129S1/SvImJ	ENSMUSG00200043902	pseudogenic gene segment	Chr14:42414226-42414495 (+)
A/J	ENSMUSG00195025125	pseudogenic gene segment	Chr14:42201316-42201573 (+)
AKR/J	ENSMUSG00220035530	pseudogenic gene segment	Chr14:41649911-41650168 (-)
BALB/cJ	ENSMUSG00180052467	pseudogenic gene segment	Chr14:42261820-42262089 (+)
C3H/HeJ	ENSMUSG00175049870	pseudogenic gene segment	Chr14:43944276-43944545 (+)
C57BL/6NJ	ENSMUSG00215049095	pseudogenic gene segment	Chr14:42180439-42180683 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049637	pseudogenic gene segment	Chr14:43990907-43991151 (+)
CBA/J	ENSMUSG00210047787	pseudogenic gene segment	Chr14:42179503-42179760 (+)
DBA/2J	ENSMUSG00185055744	pseudogenic gene segment	Chr14:47400928-47401208 (+)
FVB/NJ	ENSMUSG00205045489	pseudogenic gene segment	Chr14:41523609-41523878 (+)
JF1/MsJ	ENSUMUG00000053810	pseudogenic gene segment	Chr14:58959387-58959656 (+)
LP/J	ENSMUSG00230053554	pseudogenic gene segment	Chr14:59780300-59780569 (+)
NOD/ShiLtJ	ENSMUSG00190049806	pseudogenic gene segment	Chr14:42330623-42330986 (+)
NZO/HlLtJ	ENSMUSG00225052660	pseudogenic gene segment	Chr14:50078368-50078637 (+)
PWK/PhJ	ENSLUMG00010048131	pseudogenic gene segment	Chr14:41830520-41830789 (+)
SPRET/EiJ	ENSMSPG00010047672	pseudogenic gene segment	Chr14:45247743-45248012 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Trav5n-3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav5n-3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000105467 (Evidence)
• NCBI Gene
  100126455

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105467	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00000164511	Ensembl | MGI Sequence Detail	270	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61