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Trav5n-3 Pseudogene Detail
Summary
  • Symbol
    Trav5n-3
  • Name
    T cell receptor alpha variable 5N-3
  • Synonyms
    Gm17648
  • Feature Type
    pseudogenic gene segment
  • IDs
    MGI:4937282
    NCBI Gene: 100126455
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:53239284-53239553 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.28 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4937282
pseudogenic gene segment Chr14:53239284-53239563 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002612
pseudogenic gene segment Chr14:47187345-47187614 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002567
pseudogenic gene segment Chr14:47753458-47753727 (+)
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002567
pseudogenic gene segment Chr14:45829398-45829613 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002549
pseudogenic gene segment Chr14:50827576-50827845 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002724
pseudogenic gene segment Chr14:47060477-47060746 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0002541
pseudogenic gene segment Chr14:47416371-47416640 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000105467 Ensembl Gene Model | MGI Sequence Detail 270 C57BL/6J ±  kb
transcript ENSMUST00000164511 Ensembl | MGI Sequence Detail 270 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 6
    Phenotypes 2
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory