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Platr30 Gene Detail
Summary
  • Symbol
    Platr30
  • Name
    pluripotency associated transcript 30
  • Synonyms
    Gm17580
Location &
Maps
more
  • Sequence Map
    Chr3:96252603-96265795 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 41.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    17 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4937214
 lncRNA gene Chr3:96252603-96265796 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0006240
 lincRNA gene Chr3:94103342-94118007 (+)
AKR/J MGP_AKRJ_G0006214
 lincRNA gene Chr3:96323187-96338058 (+)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0006165
 lincRNA gene Chr3:96622928-96636041 (-)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0006099
 lincRNA gene Chr3:95914469-95932814 (-)
CBA/J MGP_CBAJ_G0006150
 lincRNA gene Chr3:104446274-104469255 (+)
DBA/2J MGP_DBA2J_G0006169
 lincRNA gene Chr3:93416751-93430012 (+)
FVB/NJ MGP_FVBNJ_G0006191
 lincRNA gene Chr3:91466071-91479333 (+)
LP/J MGP_LPJ_G0006251
 lincRNA gene Chr3:98522802-98539277 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006183
 lincRNA gene Chr3:110508607-110525647 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006384
 lincRNA gene Chr3:95970078-95983834 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0006147
 lincRNA gene Chr3:96383973-96397371 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Platr30
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    10
Sequences &
Gene Models
less
  • All Sequences
    19
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100504145 NCBI Gene Model | MGI Sequence Detail 13193 C57BL/6J ±  kb
transcript NR_152105 RefSeq | MGI Sequence Detail 1989 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10
References
more
  • Summaries
    All 13
    Diseases 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory