Gm17396 Gene Detail

Summary

• Symbol
  Gm17396
• Name
  predicted gene, 17396

• Feature Type
  lncRNA gene
• IDs
  MGI:4937030
  NCBI Gene: 102635502
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:117081601-117083766 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 69.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937030	lncRNA gene	Chr9:117081590-117083771 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015764	unclassified non-coding RNA gene	Chr9:119884018-119886178 (+)
A/J	MGP_AJ_G0015741	unclassified non-coding RNA gene	Chr9:115447633-115449761 (+)
AKR/J	MGP_AKRJ_G0015704	unclassified non-coding RNA gene	Chr9:118420958-118424945 (+)
BALB/cJ	MGP_BALBcJ_G0015702	unclassified non-coding RNA gene	Chr9:115298297-115300453 (+)
C3H/HeJ	MGP_C3HHeJ_G0015523	unclassified non-coding RNA gene	Chr9:118910848-118912980 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016157	unclassified non-coding RNA gene	Chr9:123144772-123149092 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013881	unclassified non-coding RNA gene	Chr9:112686178-112688305 (+)
CAST/EiJ	MGP_CASTEiJ_G0015078	unclassified non-coding RNA gene	Chr9:118824385-118826542 (+)
CBA/J	MGP_CBAJ_G0015503	unclassified non-coding RNA gene	Chr9:127742386-127747327 (+)
DBA/2J	MGP_DBA2J_G0015601	unclassified non-coding RNA gene	Chr9:114911714-114913876 (+)
FVB/NJ	MGP_FVBNJ_G0015607	unclassified non-coding RNA gene	Chr9:113750859-113753003 (+)
LP/J	MGP_LPJ_G0015682	unclassified non-coding RNA gene	Chr9:120211986-120214134 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015630	unclassified non-coding RNA gene	Chr9:128871107-128873239 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016200	unclassified non-coding RNA gene	Chr9:118791992-118794150 (+)
PWK/PhJ	MGP_PWKPhJ_G0014861	unclassified non-coding RNA gene	Chr9:115267077-115269280 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014648	unclassified non-coding RNA gene	Chr9:118888490-118890687 (+)
WSB/EiJ	MGP_WSBEiJ_G0015182	unclassified non-coding RNA gene	Chr9:118700423-118702588 (+)

Homology

• Gene Tree
  Gm17396
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000079669 (Evidence)
• NCBI Gene
  102635502

Representative Sequences			Length	Strain/Species
genomic	102635502	NCBI Gene Model | MGI Sequence Detail	2166	C57BL/6J
transcript	NR_166691	RefSeq | MGI Sequence Detail	1660	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm17396:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87601	Chr9:117081589-117081627 (+)	7 bp