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Pate3 Gene Detail
Summary
  • Symbol
    Pate3
  • Name
    prostate and testis expressed 3
  • Synonyms
    Gm17365
  • Feature Type
    protein coding gene
  • IDs
    MGI:4936999
    NCBI Gene: 100312956
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:35645113-35648202 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 20.37 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    23 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4936999
protein coding gene Chr9:35645113-35648203 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034541
protein coding gene Chr9:33458710-33461795 (-)
A/J MGP_AJ_G0034519
protein coding gene Chr9:32590977-32594062 (-)
AKR/J MGP_AKRJ_G0034445
protein coding gene Chr9:33324337-33327422 (-)
BALB/cJ MGP_BALBcJ_G0034510
protein coding gene Chr9:32503723-32506808 (-)
C3H/HeJ MGP_C3HHeJ_G0034222
protein coding gene Chr9:33663323-33666408 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035031
protein coding gene Chr9:34574342-34577427 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031961
protein coding gene Chr9:31264137-31267398 (-)
CAST/EiJ MGP_CASTEiJ_G0033545
protein coding gene Chr9:33567028-33570113 (-)
CBA/J MGP_CBAJ_G0034196
protein coding gene Chr9:35730734-35733818 (-)
DBA/2J MGP_DBA2J_G0034353
protein coding gene Chr9:32575398-32578483 (-)
FVB/NJ MGP_FVBNJ_G0034296
protein coding gene Chr9:31990342-31993427 (-)
LP/J MGP_LPJ_G0034439
protein coding gene Chr9:33706624-33709683 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034340
protein coding gene Chr9:37316768-37319853 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035051
protein coding gene Chr9:33276294-33279353 (-)
PWK/PhJ MGP_PWKPhJ_G0033250
protein coding gene Chr9:32558195-32561278 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033085
protein coding gene Chr9:33557532-33560616 (-)
WSB/EiJ MGP_WSBEiJ_G0033660
protein coding gene Chr9:33046621-33049706 (-)



Homology
more
  • Human Ortholog
    PATE3, prostate and testis expressed 3
  • Vertebrate Orthologs
    6
  • Human Ortholog
    PATE3, prostate and testis expressed 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HEL-127, PATE-DJ
  • Links
    NCBI Gene ID: 100169851
    neXtProt AC: NX_B3GLJ2
    UniProt: B3GLJ2

  • Chr Location
    chr11:125785996-125791600 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 2 alleles in 1 genetic background
    1 phenotype reference
Male mice exhibit normal spermatozoa and fecundity.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000094995 Ensembl Gene Model | MGI Sequence Detail 3090 C57BL/6J ±  kb
transcript ENSMUST00000178236 Ensembl | MGI Sequence Detail 1329 Not Applicable  
polypeptide ENSMUSP00000136668 Ensembl | MGI Sequence Detail 98 Not Applicable  
For the selected sequence
Protein
Information
less
References
more
  • Summaries
    All 12
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:138601 Levitin F, et al., PATE gene clusters code for multiple, secreted TFP/Ly-6/uPAR proteins that are expressed in reproductive and neuron-rich tissues and possess neuromodulatory activity. J Biol Chem. 2008 Jun 13;283(24):16928-39
  • Latest
    J:279041 Noda T, et al., Nine genes abundantly expressed in the epididymis are not essential for male fecundity in mice. Andrology. 2019;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory