Gm17344 Gene Detail

Summary

• Symbol
  Gm17344
• Name
  predicted gene, 17344

• Feature Type
  lncRNA gene
• IDs
  MGI:4936978
  NCBI Gene: 115486898
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:110579166-110595087 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 57.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936978	lncRNA gene	Chr8:110563999-110595087 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004582	antisense lncRNA gene	Chr8:112476317-112484558 (-)
A/J	MGP_AJ_G0004562	antisense lncRNA gene	Chr8:107917562-107927231 (-)
AKR/J	MGP_AKRJ_G0004546	antisense lncRNA gene	Chr8:111080577-111089010 (-)
BALB/cJ	MGP_BALBcJ_G0004547	antisense lncRNA gene	Chr8:108124300-108132959 (-)
C3H/HeJ	MGP_C3HHeJ_G0004496	antisense lncRNA gene	Chr8:111790121-111798592 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004696	antisense lncRNA gene	Chr8:116445274-116453516 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004147	antisense lncRNA gene	Chr8:100947291-100955751 (-)
CAST/EiJ	MGP_CASTEiJ_G0004455	antisense lncRNA gene	Chr8:111390999-111399467 (-)
CBA/J	MGP_CBAJ_G0004490	antisense lncRNA gene	Chr8:120358350-120366779 (-)
DBA/2J	MGP_DBA2J_G0004505	antisense lncRNA gene	Chr8:107243378-107251836 (-)
FVB/NJ	MGP_FVBNJ_G0004522	antisense lncRNA gene	Chr8:106193293-106201529 (-)
LP/J	MGP_LPJ_G0004586	antisense lncRNA gene	Chr8:112653061-112661526 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004511	antisense lncRNA gene	Chr8:123372616-123382864 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004696	antisense lncRNA gene	Chr8:111041839-111050081 (-)
PWK/PhJ	MGP_PWKPhJ_G0004407	antisense lncRNA gene	Chr8:106799745-106808297 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004348	antisense lncRNA gene	Chr8:109723215-109732642 (-)
WSB/EiJ	MGP_WSBEiJ_G0004495	antisense lncRNA gene	Chr8:111727057-111735304 (-)

Homology

• Gene Tree
  Gm17344
  

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  3

• Ensembl
  ENSMUSG00000078143 (Evidence)
• NCBI Gene
  115486898

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078143	Ensembl Gene Model | MGI Sequence Detail	15922	C57BL/6J
transcript	ENSMUST00000242523	Ensembl | MGI Sequence Detail	1576	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm17344:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82859	Chr8:110595053-110595071 (-)	25 bp