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Tarbp1 Gene Detail
Summary
  • Symbol
    Tarbp1
  • Name
    TAR RNA binding protein 1
  • Synonyms
    Gm17296
  • Feature Type
    protein coding gene
  • IDs
    MGI:4936930
    NCBI Gene: 212728
  • Gene Overview
    MyGene.info: TARBP1
Location & Maps
more
  • Sequence Map
    Chr8:126426652-126475065 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      48414 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 74.10 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    TARBP1, TAR (HIV-1) RNA binding protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TARBP1, TAR (HIV-1) RNA binding protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TRM3, TRP185, TRP-185
  • Links
    NCBI Gene ID: 6894
    neXtProt AC: NX_Q13395

  • Chr Location
    1q42.3; chr1:234391313-234479158 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Other Mouse Links
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090290 Ensembl Gene Model | MGI Sequence Detail 48414 C57BL/6J ±  kb
transcript ENSMUST00000170518 Ensembl | MGI Sequence Detail 5060 Not Applicable  
polypeptide ENSMUSP00000129815 Ensembl | MGI Sequence Detail 1579 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    426 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR029028 Alpha/beta knot methyltransferases
    IPR016024 Armadillo-type fold
    IPR025806 Probable methyltransferase TARBP1
    IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal
    IPR001537 tRNA/rRNA methyltransferase, SpoU type
References
more
  • Summaries
    All 13
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
  • Latest
    J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory