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Tarbp1 Gene Detail
Summary
  • Symbol
    Tarbp1
  • Name
    TAR RNA binding protein 1
  • Synonyms
    Gm17296
  • Feature Type
    protein coding gene
  • IDs
    MGI:4936930
    NCBI Gene: 212728
  • Gene Overview
    MyGene.info: TARBP1
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:126425329-126475065 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 74.10 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    429 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4936930
protein coding gene Chr8:126425314-126475113 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034295
protein coding gene Chr8:130252984-130306345 (-)
A/J MGP_AJ_G0034274
protein coding gene Chr8:124838820-124888578 (-)
AKR/J MGP_AKRJ_G0034201
protein coding gene Chr8:128424508-128484220 (-)
BALB/cJ MGP_BALBcJ_G0034267
protein coding gene Chr8:125001265-125058229 (-)
C3H/HeJ MGP_C3HHeJ_G0033978
protein coding gene Chr8:129076262-129127026 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034787
protein coding gene Chr8:134563297-134622109 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031729
protein coding gene Chr8:117535554-117582136 (-)
CAST/EiJ MGP_CASTEiJ_G0033305
protein coding gene Chr8:129230754-129299519 (-)
CBA/J MGP_CBAJ_G0033952
protein coding gene Chr8:139562295-139611667 (-)
DBA/2J MGP_DBA2J_G0034107
protein coding gene Chr8:123976818-124025992 (-)
FVB/NJ MGP_FVBNJ_G0034052
protein coding gene Chr8:123192213-123241447 (-)
LP/J MGP_LPJ_G0034196
protein coding gene Chr8:130401357-130454362 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034098
protein coding gene Chr8:141488069-141541810 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034806
protein coding gene Chr8:128671255-128722766 (-)
PWK/PhJ MGP_PWKPhJ_G0033008
protein coding gene Chr8:123745174-123797962 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032846
protein coding gene Chr8:127291279-127345894 (-)
WSB/EiJ MGP_WSBEiJ_G0033423
protein coding gene Chr8:129406801-129463368 (-)



Homology
more
  • Human Ortholog
    TARBP1, TAR (HIV-1) RNA binding protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TARBP1, TAR (HIV-1) RNA binding protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TRM3, TRMT3, TRP185, TRP-185
  • Links
    NCBI Gene ID: 6894
    neXtProt AC: NX_Q13395
    UniProt: Q13395

  • Chr Location
    1q42.2; chr1:234391313-234479174 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 38082
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TARBP1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090290 Ensembl Gene Model | MGI Sequence Detail 49737 C57BL/6J ±  kb
transcript ENSMUST00000170518 Ensembl | MGI Sequence Detail 6383 Not Applicable  
polypeptide ENSMUSP00000129815 Ensembl | MGI Sequence Detail 1579 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR029028 Alpha/beta knot methyltransferases
    IPR016024 Armadillo-type fold
    IPR025806 Probable methyltransferase TARBP1
    IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal
    IPR001537 tRNA/rRNA methyltransferase, SpoU type
References
more
  • Summaries
    All 14
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory