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Traj5 Gene Detail
Summary
  • Symbol
    Traj5
  • Name
    T cell receptor alpha joining 5
  • Feature Type
    gene segment
  • IDs
    MGI:4840258
    NCBI Gene: 654839
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:54451234-54451295 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.69 cM
Strain
Comparison
more
  • SNPs within 2kb
    38 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4840258
gene segment Chr14:54451234-54451295 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002482
gene segment Chr14:48142075-48142136 (+)
A/J MGP_AJ_G0002456
gene segment Chr14:47234026-47234087 (+)
AKR/J MGP_AKRJ_G0002442
gene segment Chr14:48943013-48943074 (+)
BALB/cJ MGP_BALBcJ_G0002450
gene segment Chr14:47202809-47202870 (+)
C3H/HeJ MGP_C3HHeJ_G0002429
gene segment Chr14:48623944-48624005 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002577
gene segment Chr14:50607538-50607599 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002175
gene segment Chr14:45646744-45646805 (+)
CAST/EiJ MGP_CASTEiJ_G0002391
gene segment Chr14:44855962-44856023 (+)
CBA/J MGP_CBAJ_G0002420
gene segment Chr14:52101219-52101280 (+)
DBA/2J MGP_DBA2J_G0002425
gene segment Chr14:46978191-46978252 (+)
FVB/NJ MGP_FVBNJ_G0002439
gene segment Chr14:46432494-46432555 (+)
LP/J MGP_LPJ_G0002479
gene segment Chr14:49173254-49173315 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002409
gene segment Chr14:51543158-51543219 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002572
gene segment Chr14:48124753-48124814 (+)
PWK/PhJ MGP_PWKPhJ_G0002352
gene segment Chr14:43501820-43501881 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002304
gene segment Chr14:44101453-44101514 (+)
WSB/EiJ MGP_WSBEiJ_G0002418
gene segment Chr14:48416540-48416601 (+)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype reference
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 654839 NCBI Gene Model | MGI Sequence Detail 62 C57BL/6J ±  kb
polypeptide A0A0G2JFC2 UniProt | EBI | MGI Sequence Detail 21 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
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  • All nucleic 3
    Genomic 3
References
more
  • Summaries
    All 8
    Phenotypes 1
  • Earliest
    J:28590 Hue I, et al., A novel type of aberrant T cell receptor alpha-chain gene rearrangement. Implications for allelic exclusion and the V-J recombination process. J Immunol. 1990 Jun 1;144(11):4410-9
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory