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Trim30e-ps1 Pseudogene Detail
Summary
  • Symbol
    Trim30e-ps1
  • Name
    tripartite motif-containing 30E, pseudogene 1
  • Synonyms
    Trim30-4
  • Feature Type
    pseudogene
  • IDs
    MGI:4821258
    NCBI Gene: 625321
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr7:104182815-104184058 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 55.69 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    12 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4821258
 pseudogene Chr7:104182166-104184568 (-)
129S1/SvImJ MGP_129S1SvImJ_G0039854
 pseudogene Chr7:107574330-107576784 (-)
A/J MGP_AJ_G0039856
 pseudogene Chr7:104750295-104752749 (-)
AKR/J MGP_AKRJ_G0039783
 pseudogene Chr7:107371790-107374244 (-)
BALB/cJ MGP_BALBcJ_G0039828
 pseudogene Chr7:104479872-104482326 (-)
C3H/HeJ MGP_C3HHeJ_G0039482
 pseudogene Chr7:107629234-107631688 (-)
C57BL/6NJ MGP_C57BL6NJ_G0040404
 pseudogene Chr7:111890328-111894984 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0038589
 pseudogene Chr7:99359293-99420643 (-)
CBA/J MGP_CBAJ_G0039452
 pseudogene Chr7:115541448-115543902 (-)
DBA/2J MGP_DBA2J_G0039652
 pseudogene Chr7:103083234-103085688 (-)
FVB/NJ MGP_FVBNJ_G0039611
 pseudogene Chr7:102892561-102895015 (-)
LP/J MGP_LPJ_G0039690
 pseudogene Chr7:108893482-108895936 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0039608
 pseudogene Chr7:117159924-117162310 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0040501
 pseudogene Chr7:106561409-106563862 (-)
PWK/PhJ MGP_PWKPhJ_G0038265
 pseudogene Chr7:96198344-96200730 (-)
SPRET/EiJ MGP_SPRETEiJ_G0038009
 pseudogene Chr7:93708880-93711443 (-)
WSB/EiJ MGP_WSBEiJ_G0038822
 pseudogene Chr7:107229127-107231588 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Trim30e-ps1
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000073929 Ensembl Gene Model | MGI Sequence Detail 1244 C57BL/6J ±  kb
transcript ENSMUST00000151294 Ensembl | MGI Sequence Detail 731 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
Other
Accession IDs
less
MGI:3643754
References
more
  • Summaries
    All 17
    Phenotypes 9
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:162981 Tareen SU, et al., An expanded clade of rodent Trim5 genes. Virology. 2009 Mar 15;385(2):473-83
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory