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Trim30c Gene Detail
Summary
  • Symbol
    Trim30c
  • Name
    tripartite motif-containing 30C
  • Synonyms
    Gm5598, Trim30-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:4821257
    NCBI Gene: 434219
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr7:104382065-104400837 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 55.69 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    223 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4821257
protein coding gene Chr7:104379117-104400852 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032715
protein coding gene Chr7:107535622-107552748 (-)
A/J MGP_AJ_G0032690
protein coding gene Chr7:104719541-104728687 (-)
AKR/J MGP_AKRJ_G0032623
protein coding gene Chr7:107342293-107350612 (-)
BALB/cJ MGP_BALBcJ_G0032700
protein coding gene Chr7:104451348-104460048 (-)
C3H/HeJ MGP_C3HHeJ_G0032411
protein coding gene Chr7:107598739-107608750 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033196
protein coding gene Chr7:111723508-111745277 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030190
protein coding gene Chr7:106809300-106819075 (-)
CAST/EiJ MGP_CASTEiJ_G0031738
protein coding gene Chr7:99327598-99338126 (-)
CBA/J MGP_CBAJ_G0032379
protein coding gene Chr7:115509402-115519451 (-)
DBA/2J MGP_DBA2J_G0032533
protein coding gene Chr7:103053000-103063702 (-)
FVB/NJ MGP_FVBNJ_G0032486
protein coding gene Chr7:102763590-102774777 (-)
LP/J MGP_LPJ_G0032626
protein coding gene Chr7:108864145-108874028 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032518
protein coding gene Chr7:116988623-116997294 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033223
protein coding gene Chr7:106530485-106539840 (-)
PWK/PhJ MGP_PWKPhJ_G0031454
protein coding gene Chr7:96054595-96063470 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031299
protein coding gene Chr7:93674843-93686303 (-)
WSB/EiJ MGP_WSBEiJ_G0031855
protein coding gene Chr7:107195905-107209316 (-)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
Expression
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  • cDNA Data
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078616 Ensembl Gene Model | MGI Sequence Detail 18773 C57BL/6J ±  kb
transcript ENSMUST00000106828 Ensembl | MGI Sequence Detail 1716 Not Applicable  
polypeptide ENSMUSP00000102441 Ensembl | MGI Sequence Detail 513 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001870 B30.2/SPRY domain
    IPR000315 B-box-type zinc finger
    IPR003879 Butyrophylin-like, SPRY domain
    IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    IPR027370 RING-type zinc-finger, LisH dimerisation motif
    IPR003877 SPRY domain
    IPR032917 Tripartite motif-containing protein 5
    IPR013083 Zinc finger, RING/FYVE/PHD-type
    IPR001841 Zinc finger, RING-type
    IPR017907 Zinc finger, RING-type, conserved site
Molecular
Reagents
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  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:3647719
References
more
  • Summaries
    All 17
    Phenotypes 9
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:162981 Tareen SU, et al., An expanded clade of rodent Trim5 genes. Virology. 2009 Mar 15;385(2):473-83

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/14/2020
MGI 6.14
The Jackson Laboratory