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Trdv2-2 Gene Detail
Summary
  • Symbol
    Trdv2-2
  • Name
    T cell receptor delta variable 2-2
  • Synonyms
    Gm17015
  • Feature Type
    gene segment
  • IDs
    MGI:4819748
    NCBI Gene: 320913
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:54198450-54199059 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.59 cM
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4819748
gene segment Chr14:54198401-54199059 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002572
gene segment Chr14:47880155-47880804 (+)
A/J MGP_AJ_G0002543
gene segment Chr14:46978198-46978847 (+)
AKR/J MGP_AKRJ_G0002534
gene segment Chr14:48672518-48673167 (+)
BALB/cJ MGP_BALBcJ_G0002529
gene segment Chr14:46941706-46942355 (+)
C3H/HeJ MGP_C3HHeJ_G0002496
gene segment Chr14:48350877-48351526 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002670
gene segment Chr14:50322627-50323285 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002240
gene segment Chr14:45401349-45401993 (+)
CAST/EiJ MGP_CASTEiJ_G0002482
gene segment Chr14:44594639-44595290 (+)
CBA/J MGP_CBAJ_G0002495
gene segment Chr14:51808979-51809628 (+)
DBA/2J MGP_DBA2J_G0002499
gene segment Chr14:46704448-46705918 (+)
FVB/NJ MGP_FVBNJ_G0002527
gene segment Chr14:46178889-46179538 (+)
LP/J MGP_LPJ_G0002578
gene segment Chr14:48896162-48900325 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002502
gene segment Chr14:51272426-51273075 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002680
gene segment Chr14:47857869-47858518 (+)
PWK/PhJ MGP_PWKPhJ_G0002441
gene segment Chr14:43245392-43246041 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002393
gene segment Chr14:43834688-43835334 (+)
WSB/EiJ MGP_WSBEiJ_G0002497
gene segment Chr14:48154236-48154885 (+)



Homology
more
  • Human Ortholog
    TRAV38-1, T cell receptor alpha variable 38-1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV38-1, T cell receptor alpha variable 38-1
  • Synonyms
    TCRAV14S2, TCRAV38S1, TRAV381
  • Links
    NCBI Gene ID: 28644
    UniProt: A0A0B4J264

  • Chr Location
    14q11.2; chr14:22271968-22272563 (+)  GRCh38

  • Human Ortholog
    TRAV38-2DV8, T cell receptor alpha variable 38-2/delta variable 8
  • Synonyms
    hADV38S2, TCRAV14S1, TRAV382DV8
  • Links
    NCBI Gene ID: 28643
    UniProt: A0JD32

  • Chr Location
    14q11.2; chr14:22281105-22281748 (+)  GRCh38

Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 320913 NCBI Gene Model | MGI Sequence Detail 610 C57BL/6J ±  kb
transcript AA756275 GenBank | ENA | DDBJ | MGI Sequence Detail 526 C57BL/6  
polypeptide Q5R1A4 UniProt | EBI | MGI Sequence Detail 116 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 2
    Genomic 1
    cDNA 1
References
more
  • Summaries
    All 10
    Gene Ontology 1
  • Earliest
    J:9030 Elliott JF, et al., The adult T-cell receptor delta-chain is diverse and distinct from that of fetal thymocytes. Nature. 1988 Feb 18;331(6157):627-31
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory