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Carmn Gene Detail
Summary
  • Symbol
    Carmn
  • Name
    cardiac mesoderm enhancer-associated non-coding RNA
  • Synonyms
    Carmen, Mir143hg
  • Feature Type
    lncRNA gene
  • IDs
    MGI:4439832
    NCBI Gene: 328968
  • Alliance
    gene page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:61782325-61799611 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 34.64 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    531 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439832
 lncRNA gene Chr18:61778947-61799611 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005794
 lincRNA gene Chr18:61549177-61565585 (-)
A/J MGP_AJ_G0005783
 lincRNA gene Chr18:58906702-58922618 (-)
AKR/J MGP_AKRJ_G0005760
 lincRNA gene Chr18:60528391-60544305 (-)
BALB/cJ MGP_BALBcJ_G0005762
 lincRNA gene Chr18:59030726-59046654 (-)
C3H/HeJ MGP_C3HHeJ_G0005710
 lincRNA gene Chr18:60761406-60777286 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005923
 lincRNA gene Chr18:63220917-63236828 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005266
 lincRNA gene Chr18:58452446-58468494 (-)
CAST/EiJ MGP_CASTEiJ_G0005651
 lincRNA gene Chr18:60642491-60659053 (-)
CBA/J MGP_CBAJ_G0005697
 lincRNA gene Chr18:65269367-65288387 (-)
DBA/2J MGP_DBA2J_G0005715
 lincRNA gene Chr18:58576053-58592163 (-)
FVB/NJ MGP_FVBNJ_G0005742
 lincRNA gene Chr18:57982138-57999327 (-)
LP/J MGP_LPJ_G0005796
 lincRNA gene Chr18:61406479-61422403 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005728
 lincRNA gene Chr18:66837606-66854791 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005921
 lincRNA gene Chr18:60734705-60752842 (-)
PWK/PhJ MGP_PWKPhJ_G0005596
 lincRNA gene Chr18:58806726-58822740 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005512
 lincRNA gene Chr18:60962706-60979137 (-)
WSB/EiJ MGP_WSBEiJ_G0005703
 lincRNA gene Chr18:60588702-60605045 (-)



Homology
more
  • Human Ortholog
    CARMN, cardiac mesoderm enhancer-associated non-coding RNA
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CARMN, cardiac mesoderm enhancer-associated non-coding RNA
  • Synonyms
    CARMEN, MIR143HG
  • Links
    NCBI Gene ID: 728264

  • Chr Location
    5q32; chr5:149406609-149432836 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a conditional allele activated in vascular smooth muscle exhibit exacerbated neointima formation and increased vascular smooth muscle cell proliferation following left carotid artery ligation. Mice homozygous for an exon 1 and promoter deletion with induced atherosclerosis show more advanced lesions.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    812
  • Tissues
    67
  • cDNA Data
    3
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      47
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000097324 Ensembl Gene Model | MGI Sequence Detail 17287 C57BL/6J ±  kb
    transcript ENSMUST00000181155 Ensembl | MGI Sequence Detail 3346 Not Applicable  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 12
      cDNA 3
      Primer pair 8
      Other 1
    References
    more
    • Summaries
      All 18
      Developmental Gene Expression 2
      Gene Ontology 1
      Phenotypes 8
    • Earliest
      J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
    • Latest
      J:374791 He X, et al., The IncRNA, Cardiac Mesoderm Enhancer-Associated Noncoding RNA Is Indispensable for Intestinal Smooth Muscle Homeostasis in Female Mice as Revealed by a Novel Endogenous Myh11-Encoded Inducible Cre Model. Gastro Hep Adv. 2024;3(3):399-401
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    01/13/2026
    MGI 6.24     		The Jackson Laboratory