Ighv1-14 Gene Detail

Summary

• Symbol
  Ighv1-14
• Name
  immunoglobulin heavy variable 1-14
• Synonyms
  Gm16857

• Feature Type
  gene segment
  BioType Conflict
  
• IDs
  MGI:4439781
  NCBI Gene: 629863
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:114610192-114610485 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439781	gene segment	Chr12:114610192-114610676 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000221	pseudogenic gene segment	Chr12:117379533-117380017 (-)
A/J	MGP_AJ_G0000200	pseudogenic gene segment	Chr12:112820244-112820728 (-)
AKR/J	MGP_AKRJ_G0000198	pseudogenic gene segment	Chr12:116154706-116155190 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0000194	pseudogenic gene segment	Chr12:116507807-116508291 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000281	pseudogenic gene segment	Chr12:120944857-120945341 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000110	pseudogenic gene segment	Chr12:109146951-109147435 (-)
CAST/EiJ	MGP_CASTEiJ_G0000192	pseudogenic gene segment	Chr12:111309816-111310300 (-)
CBA/J	MGP_CBAJ_G0000187	pseudogenic gene segment	Chr12:125560358-125560842 (-)
DBA/2J	MGP_DBA2J_G0000187	pseudogenic gene segment	Chr12:112399427-112399911 (-)
FVB/NJ	MGP_FVBNJ_G0000190	pseudogenic gene segment	Chr12:111095722-111096206 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0000197	pseudogenic gene segment	Chr12:128847603-128848087 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000272	pseudogenic gene segment	Chr12:115538011-115538495 (-)
PWK/PhJ	MGP_PWKPhJ_G0000162	pseudogenic gene segment	Chr12:107055743-107056227 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000147	pseudogenic gene segment	Chr12:109831004-109831488 (-)
WSB/EiJ	MGP_WSBEiJ_G0000201	pseudogenic gene segment	Chr12:116549538-116550022 (-)

Homology

• Gene Tree
  Ighv1-14
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000104422 (Evidence)
• NCBI Gene
  629863

Representative Sequences			Length	Strain/Species
genomic	629863	NCBI Gene Model | MGI Sequence Detail	294	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Ighv1-14:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118092	Chr12:114610674-114610677 (-)	-191 bp