Traj53 Gene Detail

Summary

• Symbol
  Traj53
• Name
  T cell receptor alpha joining 53
• Synonyms
  Gm16772

• Feature Type
  gene segment
• IDs
  MGI:4439696
  NCBI Gene: 100124335
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54400101-54400166 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439696	gene segment	Chr14:54400101-54400166 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002439	gene segment	Chr14:48090685-48090750 (+)
A/J	MGP_AJ_G0002413	gene segment	Chr14:47182829-47182894 (+)
AKR/J	MGP_AKRJ_G0002399	gene segment	Chr14:48889066-48889131 (+)
BALB/cJ	MGP_BALBcJ_G0002407	gene segment	Chr14:47147744-47147809 (+)
C3H/HeJ	MGP_C3HHeJ_G0002386	gene segment	Chr14:48571439-48571504 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002534	gene segment	Chr14:50556124-50556189 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002348	gene segment	Chr14:44804276-44804341 (+)
CBA/J	MGP_CBAJ_G0002377	gene segment	Chr14:52047306-52047371 (+)
DBA/2J	MGP_DBA2J_G0002382	gene segment	Chr14:46921195-46921260 (+)
FVB/NJ	MGP_FVBNJ_G0002396	gene segment	Chr14:46381597-46381662 (+)
LP/J	MGP_LPJ_G0002436	gene segment	Chr14:49115017-49115082 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002366	gene segment	Chr14:51490591-51490656 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002529	gene segment	Chr14:48073031-48073096 (+)
PWK/PhJ	MGP_PWKPhJ_G0002309	gene segment	Chr14:43449828-43449893 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002261	gene segment	Chr14:44049262-44049327 (+)
WSB/EiJ	MGP_WSBEiJ_G0002375	gene segment	Chr14:48363773-48363838 (+)

Homology

• Human Ortholog
  TRAJ53, T cell receptor alpha joining 53

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAJ53, T cell receptor alpha joining 53
  
• Links
  HGNC:12085

  NCBI Gene ID: 28702

  
  
• Chr Location
  14q11.2; chr14:22483004-22483069 (+)  GRCh38

---

• MGI Vertebrate Homology
  Traj53 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAJ53
• Gene Tree
  Traj53
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Traj53
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076878 (Evidence)
• NCBI Gene
  100124335

Representative Sequences			Length	Strain/Species
genomic	100124335	NCBI Gene Model | MGI Sequence Detail	66	C57BL/6J
polypeptide	A0A0G2JGM9	UniProt | EBI | MGI Sequence Detail	22	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61