Gm16754 Gene Detail

Summary

• Symbol
  Gm16754
• Name
  predicted gene, 16754

• Feature Type
  lncRNA gene
• IDs
  MGI:4439678
  NCBI Gene: 100503569
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:21136637-21144429 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 7.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  18 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439678	lncRNA gene	Chr9:21136637-21144429 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015731	unclassified non-coding RNA gene	Chr9:18417691-18426527 (+)
A/J	MGP_AJ_G0015709	unclassified non-coding RNA gene	Chr9:18111022-18118827 (+)
AKR/J	MGP_AKRJ_G0015672	unclassified non-coding RNA gene	Chr9:18436410-18446144 (+)
BALB/cJ	MGP_BALBcJ_G0015670	unclassified non-coding RNA gene	Chr9:18003301-18010887 (+)
C3H/HeJ	MGP_C3HHeJ_G0015492	unclassified non-coding RNA gene	Chr9:18745967-18755492 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016125	unclassified non-coding RNA gene	Chr9:19160239-19167843 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013851	unclassified non-coding RNA gene	Chr9:17236616-17244611 (+)
CAST/EiJ	MGP_CASTEiJ_G0015046	unclassified non-coding RNA gene	Chr9:18574113-18583874 (+)
CBA/J	MGP_CBAJ_G0015472	unclassified non-coding RNA gene	Chr9:19883126-19893529 (+)
DBA/2J	MGP_DBA2J_G0015569	unclassified non-coding RNA gene	Chr9:18085864-18093185 (+)
FVB/NJ	MGP_FVBNJ_G0015575	unclassified non-coding RNA gene	Chr9:17611511-17620355 (+)
LP/J	MGP_LPJ_G0015649	unclassified non-coding RNA gene	Chr9:18592143-18601599 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015597	unclassified non-coding RNA gene	Chr9:21486105-21496577 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016167	unclassified non-coding RNA gene	Chr9:18396863-18406299 (+)
PWK/PhJ	MGP_PWKPhJ_G0014827	unclassified non-coding RNA gene	Chr9:18066637-18074426 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014616	unclassified non-coding RNA gene	Chr9:18448990-18456492 (+)
WSB/EiJ	MGP_WSBEiJ_G0015150	unclassified non-coding RNA gene	Chr9:18117429-18128600 (+)

Homology

• Gene Tree
  Gm16754
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  18
• Gene trapped
  18
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  5

• Ensembl
  ENSMUSG00000097439 (Evidence)
• NCBI Gene
  100503569

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097439	Ensembl Gene Model | MGI Sequence Detail	7793	C57BL/6J
transcript	ENSMUST00000181222	Ensembl | MGI Sequence Detail	2077	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16754:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83977	Chr9:21136659-21136684 (+)	35 bp
Tssr83978	Chr9:21136692-21136727 (+)	73 bp