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Traj16 Gene Detail
Summary
  • Symbol
    Traj16
  • Name
    T cell receptor alpha joining 16
  • Synonyms
    Gm16656
Location &
Maps
more
  • Sequence Map
    Chr14:54203134-54203194 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439580
gene segment Chr14:54203134-54203194 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002474
gene segment Chr14:48131419-48131479 (+)
A/J MGP_AJ_G0002448
gene segment Chr14:47223368-47223428 (+)
AKR/J MGP_AKRJ_G0002434
gene segment Chr14:48932353-48932413 (+)
BALB/cJ MGP_BALBcJ_G0002442
gene segment Chr14:47192149-47192209 (+)
C3H/HeJ MGP_C3HHeJ_G0002421
gene segment Chr14:48613173-48613233 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002569
gene segment Chr14:50596895-50596955 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002167
gene segment Chr14:45636007-45636067 (+)
CAST/EiJ MGP_CASTEiJ_G0002383
gene segment Chr14:44845301-44845361 (+)
CBA/J MGP_CBAJ_G0002412
gene segment Chr14:52090559-52090619 (+)
DBA/2J MGP_DBA2J_G0002417
gene segment Chr14:46967530-46967590 (+)
FVB/NJ MGP_FVBNJ_G0002431
gene segment Chr14:46421813-46421873 (+)
LP/J MGP_LPJ_G0002471
gene segment Chr14:49162598-49162658 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002401
gene segment Chr14:51532512-51532572 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002564
gene segment Chr14:48114093-48114153 (+)
PWK/PhJ MGP_PWKPhJ_G0002344
gene segment Chr14:43491160-43491220 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002296
gene segment Chr14:44090984-44091044 (+)
WSB/EiJ MGP_WSBEiJ_G0002410
gene segment Chr14:48405911-48405971 (+)



Homology
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Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype reference
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 100124387 NCBI Gene Model | MGI Sequence Detail 61 C57BL/6J ±  kb
polypeptide A0A0G2JEK3 UniProt | EBI | MGI Sequence Detail 20 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
References
more
  • Summaries
    All 6
    Phenotypes 1
  • Earliest
    J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/10/2020
MGI 6.16
The Jackson Laboratory