Trdd1 Gene Detail

Summary

• Symbol
  Trdd1
• Name
  T cell receptor delta diversity 1
• Synonyms
  Gm16623

• Feature Type
  gene segment
• IDs
  MGI:4439547
  NCBI Gene: 100114902
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54350925-54350933 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439547	gene segment	Chr14:54350925-54350935 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002425	gene segment	Chr14:48047184-48047194 (+)
A/J	MGP_AJ_G0002399	gene segment	Chr14:47139876-47139886 (+)
AKR/J	MGP_AKRJ_G0002385	gene segment	Chr14:48846198-48846208 (+)
BALB/cJ	MGP_BALBcJ_G0002393	gene segment	Chr14:47105528-47105538 (+)
C3H/HeJ	MGP_C3HHeJ_G0002372	gene segment	Chr14:48526397-48526407 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002521	gene segment	Chr14:50498773-50498783 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002122	gene segment	Chr14:45554068-45554078 (+)
CAST/EiJ	MGP_CASTEiJ_G0002335	gene segment	Chr14:44759521-44759531 (+)
CBA/J	MGP_CBAJ_G0002364	gene segment	Chr14:51999641-51999651 (+)
DBA/2J	MGP_DBA2J_G0002369	gene segment	Chr14:46877572-46877582 (+)
FVB/NJ	MGP_FVBNJ_G0002382	gene segment	Chr14:46339059-46339069 (+)
LP/J	MGP_LPJ_G0002424	gene segment	Chr14:49072759-49072769 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002353	gene segment	Chr14:51444653-51444663 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002515	gene segment	Chr14:48030538-48030548 (+)
PWK/PhJ	MGP_PWKPhJ_G0002296	gene segment	Chr14:43406617-43406627 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002249	gene segment	Chr14:44004827-44004837 (+)
WSB/EiJ	MGP_WSBEiJ_G0002363	gene segment	Chr14:48319700-48319710 (+)

Homology

• Gene Tree
  Trdd1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000096749 (Evidence)
• NCBI Gene
  100114902

Representative Sequences			Length	Strain/Species
genomic	100114902	NCBI Gene Model | MGI Sequence Detail	9	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trdd1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125526	Chr14:54350784-54350795 (+)	-135 bp
Tssr125527	Chr14:54350892-54350903 (+)	-27 bp