n-R5s204 Gene Detail

Summary

• Symbol
  n-R5s204
• Name
  nuclear encoded rRNA 5S 204

• Feature Type
  rRNA gene
  BioType Conflict
  
• IDs
  MGI:4422069
  NCBI Gene: 115489563
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:119461599-119461717 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 59.97 cM

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4422069	rRNA gene	Chr2:119461599-119461717 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036653	rRNA gene	Chr2:122446805-122446923 (+)
A/J	MGP_AJ_G0036641	rRNA gene	Chr2:117432008-117432126 (+)
AKR/J	MGP_AKRJ_G0036591	rRNA gene	Chr2:120713721-120713839 (+)
BALB/cJ	MGP_BALBcJ_G0036631	rRNA gene	Chr2:117678946-117679064 (+)
C3H/HeJ	MGP_C3HHeJ_G0036322	rRNA gene	Chr2:121175243-121175361 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037144	rRNA gene	Chr2:126436895-126437013 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034229	rRNA gene	Chr2:112469271-112469389 (+)
CAST/EiJ	MGP_CASTEiJ_G0035509	rRNA gene	Chr2:121494168-121494286 (+)
CBA/J	MGP_CBAJ_G0036295	rRNA gene	Chr2:130874760-130874878 (+)
DBA/2J	MGP_DBA2J_G0036470	rRNA gene	Chr2:116833899-116834017 (+)
FVB/NJ	MGP_FVBNJ_G0036427	rRNA gene	Chr2:115664110-115664228 (+)
LP/J	MGP_LPJ_G0036518	rRNA gene	Chr2:122713951-122714069 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036424	rRNA gene	Chr2:135202165-135202283 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037259	rRNA gene	Chr2:120828810-120828928 (+)
PWK/PhJ	MGP_PWKPhJ_G0035208	rRNA gene	Chr2:116417755-116417873 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035025	rRNA gene	Chr2:120023852-120023970 (+)
WSB/EiJ	MGP_WSBEiJ_G0035712	rRNA gene	Chr2:121664372-121664490 (+)

Homology

• Gene Tree
  n-R5s204
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000064906 (Evidence)
• NCBI Gene
  115489563

Representative Sequences			Length	Strain/Species
genomic	115489563	NCBI Gene Model | MGI Sequence Detail	119	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:156847 Gardner PP, et al., Rfam: updates to the RNA families database. Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40