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n-R5s162 Gene Detail
Summary
  • Symbol
    n-R5s162
  • Name
    nuclear encoded rRNA 5S 162
Location &
Maps
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  • Sequence Map
    Chr6:60227777-60227895 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 6, 28.97 cM
Strain
Comparison
more
  • SNPs within 2kb
    12 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4422026
rRNA gene Chr6:60227777-60227895 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036704
rRNA gene Chr6:59976883-59977001 (+)
A/J MGP_AJ_G0036692
rRNA gene Chr6:57353351-57353469 (+)
AKR/J MGP_AKRJ_G0036642
rRNA gene Chr6:59246185-59246303 (+)
BALB/cJ MGP_BALBcJ_G0036682
rRNA gene Chr6:57724390-57724508 (+)
C3H/HeJ MGP_C3HHeJ_G0036373
rRNA gene Chr6:59244859-59244977 (+)
C57BL/6NJ MGP_C57BL6NJ_G0037197
rRNA gene Chr6:61297977-61298095 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0035560
rRNA gene Chr6:59151725-59151843 (+)
CBA/J MGP_CBAJ_G0036346
rRNA gene Chr6:63844005-63844123 (+)
DBA/2J MGP_DBA2J_G0036521
rRNA gene Chr6:57051864-57051982 (+)
FVB/NJ MGP_FVBNJ_G0036477
rRNA gene Chr6:56623716-56623834 (+)
LP/J MGP_LPJ_G0036568
rRNA gene Chr6:59914791-59914909 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036475
rRNA gene Chr6:66650915-66651033 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0037310
rRNA gene Chr6:59114847-59114965 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0035763
rRNA gene Chr6:59346563-59346681 (+)



Homology
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 115490446 NCBI Gene Model | MGI Sequence Detail 119 C57BL/6J ±  kb
transcript XR_004933859 RefSeq | MGI Sequence Detail 119 C57BL/6J  
For the selected sequence
References
more
  • Summaries
    All 4
  • Earliest
    J:156847 Gardner PP, et al., Rfam: updates to the RNA families database. Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory