Gm16573 Gene Detail

Summary

• Symbol
  Gm16573
• Name
  predicted gene 16573

• Feature Type
  lncRNA gene
• IDs
  MGI:4414993
  NCBI Gene: 102635191
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:56844718-56857970 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 28.33 cM

Strain
Comparison

• SNPs within 2kb
  525 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414993	lncRNA gene	Chr14:56844110-56858084 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003252	antisense lncRNA gene	Chr14:50699643-50713320 (-)
A/J	MGP_AJ_G0003228	antisense lncRNA gene	Chr14:49692345-49705566 (-)
AKR/J	MGP_AKRJ_G0003211	antisense lncRNA gene	Chr14:51492021-51505852 (-)
BALB/cJ	MGP_BALBcJ_G0003217	antisense lncRNA gene	Chr14:49683027-49696242 (-)
C3H/HeJ	MGP_C3HHeJ_G0003170	antisense lncRNA gene	Chr14:51135475-51149370 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003359	antisense lncRNA gene	Chr14:53227778-53241021 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002884	antisense lncRNA gene	Chr14:47851267-47864530 (-)
CAST/EiJ	MGP_CASTEiJ_G0003136	antisense lncRNA gene	Chr14:47457226-47470470 (-)
CBA/J	MGP_CBAJ_G0003167	antisense lncRNA gene	Chr14:54809592-54822789 (-)
DBA/2J	MGP_DBA2J_G0003172	antisense lncRNA gene	Chr14:49408812-49422040 (-)
FVB/NJ	MGP_FVBNJ_G0003191	antisense lncRNA gene	Chr14:48799905-48813541 (-)
LP/J	MGP_LPJ_G0003249	antisense lncRNA gene	Chr14:51768079-51782645 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003180	antisense lncRNA gene	Chr14:54202824-54217127 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003361	antisense lncRNA gene	Chr14:50619923-50637174 (-)
PWK/PhJ	MGP_PWKPhJ_G0003094	antisense lncRNA gene	Chr14:45930055-45943438 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003040	antisense lncRNA gene	Chr14:46689195-46702793 (-)
WSB/EiJ	MGP_WSBEiJ_G0003170	antisense lncRNA gene	Chr14:50960270-50975413 (-)

Homology

• Gene Tree
  Gm16573
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16573
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000090038 (Evidence)
• NCBI Gene
  102635191

Representative Sequences			Length	Strain/Species
genomic	102635191	NCBI Gene Model | MGI Sequence Detail	13253	C57BL/6J
transcript	NR_153784	RefSeq | MGI Sequence Detail	817	ZRU/MplStud

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16573:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128933	Chr14:56858016-56858021 (-)	-49 bp
Tssr128932	Chr14:56857961-56857984 (-)	-3 bp