Gm16571 Pseudogene Detail

Summary

• Symbol
  Gm16571
• Name
  predicted gene 16571

• Feature Type
  pseudogene
• IDs
  MGI:4414991
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:131562095-131566218 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 63.44 cM

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414991	pseudogene	Chr6:131562095-131566218 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039842	pseudogene	Chr6:135542663-135546929 (+)
A/J	MGP_AJ_G0039844	pseudogene	Chr6:130217668-130223944 (+)
AKR/J	MGP_AKRJ_G0039771	pseudogene	Chr6:134024809-134044531 (+)
BALB/cJ	MGP_BALBcJ_G0039817	pseudogene	Chr6:129872569-129925411 (+)
C3H/HeJ	MGP_C3HHeJ_G0039471	pseudogene	Chr6:134052479-134112962 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0036983	pseudogene	Chr6:128471101-128476198 (+)
CAST/EiJ	MGP_CASTEiJ_G0038578	pseudogene	Chr6:133981464-134089878 (+)
CBA/J	MGP_CBAJ_G0039440	pseudogene	Chr6:144405098-144550219 (+)
DBA/2J	MGP_DBA2J_G0039641	pseudogene	Chr6:129155940-129159948 (+)
FVB/NJ	MGP_FVBNJ_G0039599	pseudogene	Chr6:127988635-128094313 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039595	pseudogene	Chr6:148247248-148254108 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040488	pseudogene	Chr6:133960064-133967623 (+)
PWK/PhJ	MGP_PWKPhJ_G0038256	pseudogene	Chr6:127479866-127534541 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038000	pseudogene	Chr6:132170501-132214148 (+)
WSB/EiJ	MGP_WSBEiJ_G0038810	pseudogene	Chr6:134512706-134516845 (+)

Homology

• Gene Tree
  Gm16571
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000089792 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089792	Ensembl Gene Model | MGI Sequence Detail	4124	C57BL/6J
transcript	ENSMUST00000159112	Ensembl | MGI Sequence Detail	291	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;