Gm16549 Gene Detail

Summary

• Symbol
  Gm16549
• Name
  predicted gene 16549

• Feature Type
  lncRNA gene
• IDs
  MGI:4414969
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:72827192-72840807 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 37.65 cM

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414969	lncRNA gene	Chr14:72827192-72840807 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003267	antisense lncRNA gene	Chr14:67324682-67339323 (+)
A/J	MGP_AJ_G0003243	antisense lncRNA gene	Chr14:65872494-65887184 (+)
AKR/J	MGP_AKRJ_G0003226	antisense lncRNA gene	Chr14:67816449-67830368 (+)
BALB/cJ	MGP_BALBcJ_G0003232	antisense lncRNA gene	Chr14:65630922-65646954 (+)
C3H/HeJ	MGP_C3HHeJ_G0003185	antisense lncRNA gene	Chr14:67542129-67555711 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003374	antisense lncRNA gene	Chr14:70269522-70286017 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002898	antisense lncRNA gene	Chr14:63611810-63625111 (+)
CAST/EiJ	MGP_CASTEiJ_G0003151	antisense lncRNA gene	Chr14:64194501-64208920 (+)
CBA/J	MGP_CBAJ_G0003182	antisense lncRNA gene	Chr14:72508078-72524100 (+)
DBA/2J	MGP_DBA2J_G0003187	antisense lncRNA gene	Chr14:65251347-65265523 (+)
FVB/NJ	MGP_FVBNJ_G0003206	antisense lncRNA gene	Chr14:64645570-64659563 (+)
LP/J	MGP_LPJ_G0003260	antisense lncRNA gene	Chr14:68541682-68554767 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003195	antisense lncRNA gene	Chr14:71347827-71362234 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003376	antisense lncRNA gene	Chr14:67071488-67084856 (+)
PWK/PhJ	MGP_PWKPhJ_G0003109	antisense lncRNA gene	Chr14:62013985-62027703 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003055	antisense lncRNA gene	Chr14:63046506-63059740 (+)
WSB/EiJ	MGP_WSBEiJ_G0003185	antisense lncRNA gene	Chr14:67432094-67446791 (+)

Homology

• Gene Tree
  Gm16549
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving Gm16549
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090216 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090216	Ensembl Gene Model | MGI Sequence Detail	13616	C57BL/6J
transcript	ENSMUST00000160445	Ensembl | MGI Sequence Detail	503	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;