Snora16a Gene Detail

Summary

• Symbol
  Snora16a
• Name
  small nucleolar RNA, H/ACA box 16A

• Feature Type
  snoRNA gene
• IDs
  MGI:4361141
  NCBI Gene: 100310813
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:132036776-132036911 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 65.16 cM

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4361141	snoRNA gene	Chr4:132036775-132036911 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039230	snoRNA gene	Chr4:134449298-134449433 (+)
A/J	MGP_AJ_G0039226	snoRNA gene	Chr4:128865363-128865498 (+)
AKR/J	MGP_AKRJ_G0039156	snoRNA gene	Chr4:132484504-132484639 (+)
BALB/cJ	MGP_BALBcJ_G0039209	snoRNA gene	Chr4:129475291-129475426 (+)
C3H/HeJ	MGP_C3HHeJ_G0038870	snoRNA gene	Chr4:132741318-132741453 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039757	snoRNA gene	Chr4:139304331-139304466 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036454	snoRNA gene	Chr4:121942313-121942447 (+)
CAST/EiJ	MGP_CASTEiJ_G0038003	snoRNA gene	Chr4:130816790-130816925 (+)
CBA/J	MGP_CBAJ_G0038841	snoRNA gene	Chr4:142877005-142877140 (+)
DBA/2J	MGP_DBA2J_G0039026	snoRNA gene	Chr4:129288550-129288685 (+)
FVB/NJ	MGP_FVBNJ_G0038981	snoRNA gene	Chr4:128136360-128136495 (+)
LP/J	MGP_LPJ_G0039070	snoRNA gene	Chr4:134606801-134606936 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038982	snoRNA gene	Chr4:147467868-147468003 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039856	snoRNA gene	Chr4:132889268-132889403 (+)
PWK/PhJ	MGP_PWKPhJ_G0037689	snoRNA gene	Chr4:125967315-125967450 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037437	snoRNA gene	Chr4:128760662-128760797 (+)
WSB/EiJ	MGP_WSBEiJ_G0038232	snoRNA gene	Chr4:133074028-133074163 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snora16a
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000065097 (Evidence), ENSMUSG00002075525 (Evidence)
• NCBI Gene
  100310813

Representative Sequences			Length	Strain/Species
genomic	100310813	NCBI Gene Model | MGI Sequence Detail	136	C57BL/6J
transcript	NR_029412	RefSeq | MGI Sequence Detail	136	Not Specified

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8