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Npcd Gene Detail
Summary
  • Symbol
    Npcd
  • Name
    neuronal pentraxin chromo domain
  • Synonyms
    Cbx6-Nptxr, neuronal pentraxin with chromo domain
  • Feature Type
    protein coding gene
  • IDs
    MGI:3845555
    NCBI Gene: 504193
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:79789675-79834237 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 37.85 cM
Strain
Comparison
more
  • SNPs within 2kb
    290 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3845555
protein coding gene Chr15:79786351-79834333 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022087
protein coding gene Chr15:80086902-80133730 (-)
A/J MGP_AJ_G0022048
protein coding gene Chr15:77313533-77360742 (-)
AKR/J MGP_AKRJ_G0022023
protein coding gene Chr15:79474701-79518955 (-)
BALB/cJ MGP_BALBcJ_G0022054
protein coding gene Chr15:77327240-77371644 (-)
C3H/HeJ MGP_C3HHeJ_G0021825
protein coding gene Chr15:79464339-79508454 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022497
protein coding gene Chr15:83236646-83284320 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020027
protein coding gene Chr15:73798690-73843220 (-)
CAST/EiJ MGP_CASTEiJ_G0021346
protein coding gene Chr15:80182628-80228361 (-)
CBA/J MGP_CBAJ_G0021790
protein coding gene Chr15:85834494-85878828 (-)
DBA/2J MGP_DBA2J_G0021919
protein coding gene Chr15:76801795-76846136 (-)
FVB/NJ MGP_FVBNJ_G0021897
protein coding gene Chr15:75828395-75872790 (-)
LP/J MGP_LPJ_G0021987
protein coding gene Chr15:80274844-80320214 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021917
protein coding gene Chr15:90926938-90973545 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022511
protein coding gene Chr15:79503517-79553533 (-)
PWK/PhJ MGP_PWKPhJ_G0021088
protein coding gene Chr15:76812997-76858599 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020925
protein coding gene Chr15:79302452-79346581 (-)
WSB/EiJ MGP_WSBEiJ_G0021398
protein coding gene Chr15:79889063-79942184 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Radiation induced
    2
  • Genomic Mutations
    3 involving Npcd
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000089837 Ensembl Gene Model | MGI Sequence Detail 44563 C57BL/6J ±  kb
transcript ENSMUST00000089299 Ensembl | MGI Sequence Detail 1453 Not Applicable  
polypeptide ENSMUSP00000086714 Ensembl | MGI Sequence Detail 469 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 1
    Other 1

    Microarray probesets 1
References
more
  • Summaries
    All 31
    Diseases 1
    Gene Ontology 1
    Phenotypes 20
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory