Gm16333 Gene Detail

Summary

• Symbol
  Gm16333
• Name
  predicted gene 16333

• Feature Type
  lncRNA gene
• IDs
  MGI:3840150
  NCBI Gene: 118568710
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:152495257-152495719 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 83.09 cM

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840150	lncRNA gene	Chr4:152494182-152496255 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004012	antisense lncRNA gene	Chr4:156534638-156535100 (+)
A/J	MGP_AJ_G0003993	antisense lncRNA gene	Chr4:149972163-149972625 (+)
AKR/J	MGP_AKRJ_G0003970	antisense lncRNA gene	Chr4:154046511-154046973 (+)
BALB/cJ	MGP_BALBcJ_G0003979	antisense lncRNA gene	Chr4:150438772-150439234 (+)
C3H/HeJ	MGP_C3HHeJ_G0003926	antisense lncRNA gene	Chr4:154613291-154613753 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004128	antisense lncRNA gene	Chr4:162153861-162154323 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003609	antisense lncRNA gene	Chr4:142310825-142311291 (+)
CAST/EiJ	MGP_CASTEiJ_G0003889	antisense lncRNA gene	Chr4:151962034-151962500 (+)
CBA/J	MGP_CBAJ_G0003919	antisense lncRNA gene	Chr4:166983633-166984095 (+)
DBA/2J	MGP_DBA2J_G0003935	antisense lncRNA gene	Chr4:150023231-150023693 (+)
FVB/NJ	MGP_FVBNJ_G0003954	antisense lncRNA gene	Chr4:149186783-149187245 (+)
LP/J	MGP_LPJ_G0004015	antisense lncRNA gene	Chr4:156457680-156458142 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003942	antisense lncRNA gene	Chr4:169983908-169984370 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004122	antisense lncRNA gene	Chr4:154583321-154583783 (+)
PWK/PhJ	MGP_PWKPhJ_G0003843	antisense lncRNA gene	Chr4:146091485-146091951 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003788	antisense lncRNA gene	Chr4:148874024-148874490 (+)
WSB/EiJ	MGP_WSBEiJ_G0003925	antisense lncRNA gene	Chr4:154775411-154775873 (+)

Homology

• Gene Tree
  Gm16333
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Gm16333
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090057 (Evidence)
• NCBI Gene
  118568710

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090057	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000161416	Ensembl | MGI Sequence Detail	318	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16