Gm16336 Gene Detail

Summary

• Symbol
  Gm16336
• Name
  predicted gene 16336

• Feature Type
  lncRNA gene
• IDs
  MGI:3840146
  NCBI Gene: 100504184
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:110504192-110505058 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 57.92 cM

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840146	lncRNA gene	Chr7:110504192-110505058 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004491	antisense lncRNA gene	Chr7:114412843-114413709 (+)
A/J	MGP_AJ_G0004471	antisense lncRNA gene	Chr7:111581552-111582418 (+)
AKR/J	MGP_AKRJ_G0004454	antisense lncRNA gene	Chr7:114371408-114372274 (+)
BALB/cJ	MGP_BALBcJ_G0004456	antisense lncRNA gene	Chr7:111265231-111266097 (+)
C3H/HeJ	MGP_C3HHeJ_G0004405	antisense lncRNA gene	Chr7:114382676-114383542 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004606	antisense lncRNA gene	Chr7:119141131-119141997 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004061	antisense lncRNA gene	Chr7:113186927-113187803 (+)
CAST/EiJ	MGP_CASTEiJ_G0004365	antisense lncRNA gene	Chr7:105967916-105968782 (+)
CBA/J	MGP_CBAJ_G0004400	antisense lncRNA gene	Chr7:123033687-123034553 (+)
DBA/2J	MGP_DBA2J_G0004414	antisense lncRNA gene	Chr7:109670617-109671483 (+)
FVB/NJ	MGP_FVBNJ_G0004431	antisense lncRNA gene	Chr7:109521697-109522563 (+)
LP/J	MGP_LPJ_G0004495	antisense lncRNA gene	Chr7:115928803-115929669 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004420	antisense lncRNA gene	Chr7:124692386-124693252 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004605	antisense lncRNA gene	Chr7:113391996-113392862 (+)
PWK/PhJ	MGP_PWKPhJ_G0004318	antisense lncRNA gene	Chr7:102506619-102507485 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004259	antisense lncRNA gene	Chr7:100139135-100140001 (+)
WSB/EiJ	MGP_WSBEiJ_G0004404	antisense lncRNA gene	Chr7:114244702-114245568 (+)

Homology

• Gene Tree
  Gm16336
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16336
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000087160 (Evidence)
• NCBI Gene
  100504184

Representative Sequences			Length	Strain/Species
genomic	100504184	NCBI Gene Model | MGI Sequence Detail	867	C57BL/6J
transcript	NR_045267	RefSeq | MGI Sequence Detail	399	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67