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Gm16343 Gene Detail
Summary
  • Symbol
    Gm16343
  • Name
    predicted gene 16343
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3840128
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:107453019-107464624 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 9, 58.16 cM
Strain
Comparison
more
  • SNPs within 2kb
    103 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3840128
lncRNA gene Chr9:107453019-107464624 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004689
antisense lncRNA gene Chr9:109456299-109472228 (-)
A/J MGP_AJ_G0004670
antisense lncRNA gene Chr9:105472736-105484294 (-)
AKR/J MGP_AKRJ_G0004653
antisense lncRNA gene Chr9:108106392-108118021 (-)
BALB/cJ MGP_BALBcJ_G0004654
antisense lncRNA gene Chr9:105142009-105153747 (-)
C3H/HeJ MGP_C3HHeJ_G0004603
antisense lncRNA gene Chr9:108504033-108515630 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004804
antisense lncRNA gene Chr9:112442810-112454406 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004248
antisense lncRNA gene Chr9:102902127-102913962 (-)
CAST/EiJ MGP_CASTEiJ_G0004559
antisense lncRNA gene Chr9:108436637-108450100 (-)
CBA/J MGP_CBAJ_G0004597
antisense lncRNA gene Chr9:116416613-116428259 (-)
DBA/2J MGP_DBA2J_G0004612
antisense lncRNA gene Chr9:104926484-104938094 (-)
FVB/NJ MGP_FVBNJ_G0004630
antisense lncRNA gene Chr9:103691803-103703984 (-)
LP/J MGP_LPJ_G0004693
antisense lncRNA gene Chr9:109657404-109670001 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004617
antisense lncRNA gene Chr9:118028861-118041546 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004803
antisense lncRNA gene Chr9:108378005-108392062 (-)
PWK/PhJ MGP_PWKPhJ_G0004512
antisense lncRNA gene Chr9:105246904-105258711 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004449
antisense lncRNA gene Chr9:108432226-108443670 (-)
WSB/EiJ MGP_WSBEiJ_G0004602
antisense lncRNA gene Chr9:108259382-108271905 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000089935 Ensembl Gene Model | MGI Sequence Detail 11606 C57BL/6J ±  kb
transcript ENSMUST00000162027 Ensembl | MGI Sequence Detail 410 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 11
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory